Cluster: CGMR062874_CGC13
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 6
- Substrate:
- Genome ID: CGMR062874
- CGC Family ID: CGCFAM_08825
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_112531 | k141_112531_9 | 12974 | 18538 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | k141_112531 | k141_112531_10 | 18886 | 20004 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | k141_112531 | k141_112531_11 | 20212 | 21099 | - | PfkB |
| TC | k141_112531 | k141_112531_12 | 21135 | 22301 | - | 2.A.1.7.17 |
| NULL(UNKNOWN) | k141_112531 | k141_112531_13 | 22363 | 22536 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_112531 | k141_112531_14 | 22643 | 24469 | - | GH32 |
| CAZyme | k141_112531 | k141_112531_15 | 24595 | 26544 | - | GH91 |
| CAZyme | k141_112531 | k141_112531_16 | 26582 | 27709 | - | GH91 |
| pfam | k141_112531 | k141_112531_17 | 27735 | 29492 | - | SusD_RagB | SusD-like_3 |
| TC | k141_112531 | k141_112531_18 | 29517 | 32588 | - | 1.B.14.6.1 |
| pfam | k141_112531 | k141_112531_19 | 32880 | 33761 | + | Bro-N |
| pfam | k141_112531 | k141_112531_20 | 33790 | 34662 | + | Aldose_epim |
| CAZyme | k141_112531 | k141_112531_21 | 34738 | 36600 | - | GH32 |
| pfam | k141_112531 | k141_112531_22 | 36759 | 37532 | - | Ubie_methyltran | TehB | MTS | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| CAZyme | k141_112531 | k141_112531_23 | 38045 | 41257 | + | GH2 |
| CAZyme | k141_112531 | k141_112531_24 | 41293 | 43554 | + | GH92 |
| pfam | k141_112531 | k141_112531_25 | 43753 | 46335 | + | Kelch_KLHDC2_KLHL20_DRC7 |
| TC | k141_112531 | k141_112531_26 | 46787 | 50065 | + | 1.B.14.6.2 |
| TC | k141_112531 | k141_112531_27 | 50077 | 52065 | + | 8.A.46.2.2 |
Gene ID: k141_112531_9
Type: TC
Location: 12974 - 18538 (-)
Type: TC
Location: 12974 - 18538 (-)
Gene ID: k141_112531_10
Type:
Location: 18886 - 20004 (-)
Type:
Location: 18886 - 20004 (-)
Gene ID: k141_112531_11
Type: STP
Location: 20212 - 21099 (-)
Type: STP
Location: 20212 - 21099 (-)
Gene ID: k141_112531_12
Type: TC
Location: 21135 - 22301 (-)
Type: TC
Location: 21135 - 22301 (-)
Gene ID: k141_112531_13
Type:
Location: 22363 - 22536 (+)
Type:
Location: 22363 - 22536 (+)
Gene ID: k141_112531_14
Type: CAZyme
Location: 22643 - 24469 (-)
Type: CAZyme
Location: 22643 - 24469 (-)
Gene ID: k141_112531_15
Type: CAZyme
Location: 24595 - 26544 (-)
Type: CAZyme
Location: 24595 - 26544 (-)
Gene ID: k141_112531_16
Type: CAZyme
Location: 26582 - 27709 (-)
Type: CAZyme
Location: 26582 - 27709 (-)
Gene ID: k141_112531_17
Type: pfam
Location: 27735 - 29492 (-)
Type: pfam
Location: 27735 - 29492 (-)
Gene ID: k141_112531_18
Type: TC
Location: 29517 - 32588 (-)
Type: TC
Location: 29517 - 32588 (-)
Gene ID: k141_112531_19
Type: pfam
Location: 32880 - 33761 (+)
Type: pfam
Location: 32880 - 33761 (+)
Gene ID: k141_112531_20
Type: pfam
Location: 33790 - 34662 (+)
Type: pfam
Location: 33790 - 34662 (+)
Gene ID: k141_112531_21
Type: CAZyme
Location: 34738 - 36600 (-)
Type: CAZyme
Location: 34738 - 36600 (-)
Gene ID: k141_112531_22
Type: pfam
Location: 36759 - 37532 (-)
Type: pfam
Location: 36759 - 37532 (-)
Gene ID: k141_112531_23
Type: CAZyme
Location: 38045 - 41257 (+)
Type: CAZyme
Location: 38045 - 41257 (+)
Gene ID: k141_112531_24
Type: CAZyme
Location: 41293 - 43554 (+)
Type: CAZyme
Location: 41293 - 43554 (+)
Gene ID: k141_112531_25
Type: pfam
Location: 43753 - 46335 (+)
Type: pfam
Location: 43753 - 46335 (+)
Gene ID: k141_112531_26
Type: TC
Location: 46787 - 50065 (+)
Type: TC
Location: 46787 - 50065 (+)
Gene ID: k141_112531_27
Type: TC
Location: 50077 - 52065 (+)
Type: TC
Location: 50077 - 52065 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_112531_10 | vegan > omnivore | 1.63279 | 0.00029 |
| k141_112531_10 | vegetarian > omnivore | 1.49708 | 0.00993 |
| k141_112531_19 | vegan > omnivore | 2.35787 | 0.00029 |
| k141_112531_19 | vegetarian > omnivore | 2.14567 | 0.00993 |
| k141_112531_24 | vegetarian > omnivore | 1.07285 | 0.00993 |