Cluster: CGMR061836_CGC3
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate: pectin
- Genome ID: CGMR061836
- CGC Family ID: CGCFAM_00079
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_71657 | k141_71657_2 | 1788 | 3347 | + | 8.A.46.1.3 |
| pfam | k141_71657 | k141_71657_3 | 3366 | 4868 | + | DUF4886 |
| CAZyme | k141_71657 | k141_71657_4 | 5001 | 6326 | + | GH144 |
Gene ID: k141_71657_2
Type: TC
Location: 1788 - 3347 (+)
Type: TC
Location: 1788 - 3347 (+)
Gene ID: k141_71657_3
Type: pfam
Location: 3366 - 4868 (+)
Type: pfam
Location: 3366 - 4868 (+)
Gene ID: k141_71657_4
Type: CAZyme
Location: 5001 - 6326 (+)
Type: CAZyme
Location: 5001 - 6326 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Species
Pedobacter sp002399615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.