Cluster: CGMR061816_CGC25
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR061816
- CGC Family ID: CGCFAM_05697
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_146778 | k141_146778_24 | 24436 | 25602 | - | CE9 |
| pfam | k141_146778 | k141_146778_25 | 25604 | 26476 | - | AP_endonuc_2 |
| CAZyme | k141_146778 | k141_146778_26 | 26494 | 27531 | - | GH179 |
| TF | k141_146778 | k141_146778_27 | 27778 | 28998 | + | HTH_AraC |
| TC | k141_146778 | k141_146778_28 | 28995 | 30764 | + | 8.A.59.2.1 |
| NULL(UNKNOWN) | k141_146778 | k141_146778_29 | 30734 | 30898 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_146778 | k141_146778_30 | 30971 | 31885 | + | 3.A.1.1.29 |
| TC | k141_146778 | k141_146778_31 | 31882 | 32754 | + | 3.A.1.1.29 |
| TC | k141_146778 | k141_146778_32 | 32845 | 34632 | + | 3.A.1.1.29 |
| pfam | k141_146778 | k141_146778_33 | 34714 | 35496 | - | Amidohydro_2 |
| pfam | k141_146778 | k141_146778_34 | 35511 | 36323 | - | Amidohydro_2 |
| CAZyme | k141_146778 | k141_146778_35 | 36350 | 39832 | - | PL17 |
| CAZyme | k141_146778 | k141_146778_36 | 39862 | 42309 | - | GH38 |
Gene ID: k141_146778_24
Type: CAZyme
Location: 24436 - 25602 (-)
Type: CAZyme
Location: 24436 - 25602 (-)
Gene ID: k141_146778_25
Type: pfam
Location: 25604 - 26476 (-)
Type: pfam
Location: 25604 - 26476 (-)
Gene ID: k141_146778_26
Type: CAZyme
Location: 26494 - 27531 (-)
Type: CAZyme
Location: 26494 - 27531 (-)
Gene ID: k141_146778_27
Type: TF
Location: 27778 - 28998 (+)
Type: TF
Location: 27778 - 28998 (+)
Gene ID: k141_146778_28
Type: TC
Location: 28995 - 30764 (+)
Type: TC
Location: 28995 - 30764 (+)
Gene ID: k141_146778_29
Type:
Location: 30734 - 30898 (+)
Type:
Location: 30734 - 30898 (+)
Gene ID: k141_146778_30
Type: TC
Location: 30971 - 31885 (+)
Type: TC
Location: 30971 - 31885 (+)
Gene ID: k141_146778_31
Type: TC
Location: 31882 - 32754 (+)
Type: TC
Location: 31882 - 32754 (+)
Gene ID: k141_146778_32
Type: TC
Location: 32845 - 34632 (+)
Type: TC
Location: 32845 - 34632 (+)
Gene ID: k141_146778_33
Type: pfam
Location: 34714 - 35496 (-)
Type: pfam
Location: 34714 - 35496 (-)
Gene ID: k141_146778_34
Type: pfam
Location: 35511 - 36323 (-)
Type: pfam
Location: 35511 - 36323 (-)
Gene ID: k141_146778_35
Type: CAZyme
Location: 36350 - 39832 (-)
Type: CAZyme
Location: 36350 - 39832 (-)
Gene ID: k141_146778_36
Type: CAZyme
Location: 39862 - 42309 (-)
Type: CAZyme
Location: 39862 - 42309 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Merdivicinus
Species
Merdivicinus sp944386445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.