Cluster: CGMR061675_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR061675
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_38450 | k141_38450_24 | 29638 | 31914 | - | 3.A.1.137.2 |
| TC | k141_38450 | k141_38450_25 | 31914 | 32612 | - | 3.A.1.122.7 |
| pfam | k141_38450 | k141_38450_26 | 33007 | 33312 | - | 2-Hacid_dh_C |
| pfam | k141_38450 | k141_38450_27 | 33380 | 33871 | + | SRAP |
| CAZyme | k141_38450 | k141_38450_28 | 33882 | 35123 | + | GH29 |
| CAZyme | k141_38450 | k141_38450_29 | 35120 | 36040 | - | GT2 |
Gene ID: k141_38450_24
Type: TC
Location: 29638 - 31914 (-)
Type: TC
Location: 29638 - 31914 (-)
Gene ID: k141_38450_25
Type: TC
Location: 31914 - 32612 (-)
Type: TC
Location: 31914 - 32612 (-)
Gene ID: k141_38450_26
Type: pfam
Location: 33007 - 33312 (-)
Type: pfam
Location: 33007 - 33312 (-)
Gene ID: k141_38450_27
Type: pfam
Location: 33380 - 33871 (+)
Type: pfam
Location: 33380 - 33871 (+)
Gene ID: k141_38450_28
Type: CAZyme
Location: 33882 - 35123 (+)
Type: CAZyme
Location: 33882 - 35123 (+)
Gene ID: k141_38450_29
Type: CAZyme
Location: 35120 - 36040 (-)
Type: CAZyme
Location: 35120 - 36040 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella biformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_38450_24 | vegan > omnivore | 1.74628 | 0.00457 |
| k141_38450_24 | vegetarian > omnivore | 2.28452 | 0.01188 |
| k141_38450_25 | vegan > omnivore | 19.45385 | 0.00457 |
| k141_38450_25 | vegetarian > omnivore | 18.75892 | 0.01188 |
| k141_38450_28 | vegan > omnivore | 2.24263 | 0.00457 |
| k141_38450_28 | vegetarian > omnivore | 2.73787 | 0.01188 |
| k141_38450_29 | vegan > omnivore | 1.03124 | 0.00457 |
| k141_38450_29 | vegetarian > omnivore | 1.04758 | 0.01188 |