Cluster: CGMR061675_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR061675
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_44067 | k141_44067_81 | 90294 | 92846 | - | 3.A.9.1.2 |
| pfam | k141_44067 | k141_44067_82 | 92971 | 93639 | - | TAL_FSA |
| TF | k141_44067 | k141_44067_83 | 93780 | 94526 | + | HTH_DeoR |
| CAZyme | k141_44067 | k141_44067_84 | 94543 | 95682 | - | CE9 |
Gene ID: k141_44067_81
Type: TC
Location: 90294 - 92846 (-)
Type: TC
Location: 90294 - 92846 (-)
Gene ID: k141_44067_82
Type: pfam
Location: 92971 - 93639 (-)
Type: pfam
Location: 92971 - 93639 (-)
Gene ID: k141_44067_83
Type: TF
Location: 93780 - 94526 (+)
Type: TF
Location: 93780 - 94526 (+)
Gene ID: k141_44067_84
Type: CAZyme
Location: 94543 - 95682 (-)
Type: CAZyme
Location: 94543 - 95682 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella biformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_44067_84 | vegan > omnivore | 1.82534 | 0.00457 |
| k141_44067_84 | vegetarian > omnivore | 2.66720 | 0.01188 |