Cluster: CGMR060366_CGC4
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR060366
- CGC Family ID: CGCFAM_06383
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_17693 | k141_17693_16 | 14168 | 14944 | - | 2.A.4.7.9 |
| TF | k141_17693 | k141_17693_17 | 15119 | 15454 | - | HTH_5 |
| sulfatase | k141_17693 | k141_17693_18 | 15605 | 16534 | + | S1_16 |
| CAZyme | k141_17693 | k141_17693_19 | 16648 | 18426 | - | GH13_39 |
| CAZyme | k141_17693 | k141_17693_20 | 18448 | 20859 | - | GT35 |
| CAZyme | k141_17693 | k141_17693_21 | 21007 | 22452 | - | GT5 |
| pfam | k141_17693 | k141_17693_22 | 22445 | 23614 | - | NTP_transferase | Hexapep_GlmU |
| pfam | k141_17693 | k141_17693_23 | 23611 | 24786 | - | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | k141_17693 | k141_17693_24 | 24783 | 26846 | - | CBM48 | GH13_9 |
| pfam | k141_17693 | k141_17693_25 | 27207 | 28238 | + | Aminotran_4 |
| pfam | k141_17693 | k141_17693_26 | 28390 | 29292 | - | Sortase |
| TC | k141_17693 | k141_17693_27 | 29665 | 30495 | - | 2.A.115.1.1 |
Gene ID: k141_17693_16
Type: TC
Location: 14168 - 14944 (-)
Type: TC
Location: 14168 - 14944 (-)
Gene ID: k141_17693_17
Type: TF
Location: 15119 - 15454 (-)
Type: TF
Location: 15119 - 15454 (-)
Gene ID: k141_17693_18
Type: sulfatase
Location: 15605 - 16534 (+)
Type: sulfatase
Location: 15605 - 16534 (+)
Gene ID: k141_17693_19
Type: CAZyme
Location: 16648 - 18426 (-)
Type: CAZyme
Location: 16648 - 18426 (-)
Gene ID: k141_17693_20
Type: CAZyme
Location: 18448 - 20859 (-)
Type: CAZyme
Location: 18448 - 20859 (-)
Gene ID: k141_17693_21
Type: CAZyme
Location: 21007 - 22452 (-)
Type: CAZyme
Location: 21007 - 22452 (-)
Gene ID: k141_17693_22
Type: pfam
Location: 22445 - 23614 (-)
Type: pfam
Location: 22445 - 23614 (-)
Gene ID: k141_17693_23
Type: pfam
Location: 23611 - 24786 (-)
Type: pfam
Location: 23611 - 24786 (-)
Gene ID: k141_17693_24
Type: CAZyme
Location: 24783 - 26846 (-)
Type: CAZyme
Location: 24783 - 26846 (-)
Gene ID: k141_17693_25
Type: pfam
Location: 27207 - 28238 (+)
Type: pfam
Location: 27207 - 28238 (+)
Gene ID: k141_17693_26
Type: pfam
Location: 28390 - 29292 (-)
Type: pfam
Location: 28390 - 29292 (-)
Gene ID: k141_17693_27
Type: TC
Location: 29665 - 30495 (-)
Type: TC
Location: 29665 - 30495 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lacticaseibacillus
Species
Lacticaseibacillus rhamnosus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.