Cluster: CGMR060366_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR060366
- CGC Family ID: CGCFAM_00209
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_20498 | k141_20498_102 | 107925 | 109916 | - | 4.A.1.2.7 |
| STP | k141_20498 | k141_20498_103 | 109903 | 110835 | - | SIS |
| CAZyme | k141_20498 | k141_20498_104 | 110876 | 111922 | - | GH170 |
| TF | k141_20498 | k141_20498_105 | 112129 | 112998 | - | HTH_6 |
| STP | k141_20498 | k141_20498_106 | 113105 | 113710 | - | TetR_N |
| TC | k141_20498 | k141_20498_107 | 114006 | 114710 | + | 3.A.1.122.14 |
Gene ID: k141_20498_102
Type: TC
Location: 107925 - 109916 (-)
Type: TC
Location: 107925 - 109916 (-)
Gene ID: k141_20498_103
Type: STP
Location: 109903 - 110835 (-)
Type: STP
Location: 109903 - 110835 (-)
Gene ID: k141_20498_104
Type: CAZyme
Location: 110876 - 111922 (-)
Type: CAZyme
Location: 110876 - 111922 (-)
Gene ID: k141_20498_105
Type: TF
Location: 112129 - 112998 (-)
Type: TF
Location: 112129 - 112998 (-)
Gene ID: k141_20498_106
Type: STP
Location: 113105 - 113710 (-)
Type: STP
Location: 113105 - 113710 (-)
Gene ID: k141_20498_107
Type: TC
Location: 114006 - 114710 (+)
Type: TC
Location: 114006 - 114710 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lacticaseibacillus
Species
Lacticaseibacillus rhamnosus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.