Cluster: CGMR060366_CGC13
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR060366
- CGC Family ID: CGCFAM_08776
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_12626 | k141_12626_5 | 5630 | 7348 | + | 3.A.1.135.4 |
| TC | k141_12626 | k141_12626_6 | 7352 | 9133 | + | 3.A.1.135.8 |
| TC | k141_12626 | k141_12626_7 | 9292 | 10515 | + | 2.A.1.11.1 |
| TF | k141_12626 | k141_12626_8 | 10819 | 11535 | + | GntR |
| CAZyme | k141_12626 | k141_12626_9 | 11584 | 13239 | + | GH13_29 |
| TC | k141_12626 | k141_12626_10 | 13243 | 15243 | + | 4.A.1.2.2 |
| TC | k141_12626 | k141_12626_11 | 15498 | 16784 | + | 2.A.23.4.1 |
| TC | k141_12626 | k141_12626_12 | 17089 | 18570 | + | 2.A.3.3.23 |
Gene ID: k141_12626_5
Type: TC
Location: 5630 - 7348 (+)
Type: TC
Location: 5630 - 7348 (+)
Gene ID: k141_12626_6
Type: TC
Location: 7352 - 9133 (+)
Type: TC
Location: 7352 - 9133 (+)
Gene ID: k141_12626_7
Type: TC
Location: 9292 - 10515 (+)
Type: TC
Location: 9292 - 10515 (+)
Gene ID: k141_12626_8
Type: TF
Location: 10819 - 11535 (+)
Type: TF
Location: 10819 - 11535 (+)
Gene ID: k141_12626_9
Type: CAZyme
Location: 11584 - 13239 (+)
Type: CAZyme
Location: 11584 - 13239 (+)
Gene ID: k141_12626_10
Type: TC
Location: 13243 - 15243 (+)
Type: TC
Location: 13243 - 15243 (+)
Gene ID: k141_12626_11
Type: TC
Location: 15498 - 16784 (+)
Type: TC
Location: 15498 - 16784 (+)
Gene ID: k141_12626_12
Type: TC
Location: 17089 - 18570 (+)
Type: TC
Location: 17089 - 18570 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lacticaseibacillus
Species
Lacticaseibacillus rhamnosus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.