Cluster: CGMR057071_CGC29
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate: host glycan/beta-glucan
- Genome ID: CGMR057071
- CGC Family ID: CGCFAM_00012
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_79185 | k141_79185_4 | 3724 | 5202 | - | GH1 |
| pfam | k141_79185 | k141_79185_5 | 5291 | 6199 | - | Mem_trans | Mem_trans |
| CAZyme | k141_79185 | k141_79185_6 | 6284 | 7735 | - | GH1 |
| CAZyme | k141_79185 | k141_79185_7 | 7728 | 9197 | - | GH1 |
| TC | k141_79185 | k141_79185_8 | 9275 | 10567 | - | 4.A.3.2.9 |
| TC | k141_79185 | k141_79185_9 | 10580 | 10882 | - | 4.A.3.2.2 |
| TC | k141_79185 | k141_79185_10 | 10879 | 11211 | - | 4.A.3.2.8 |
Gene ID: k141_79185_4
Type: CAZyme
Location: 3724 - 5202 (-)
Type: CAZyme
Location: 3724 - 5202 (-)
Gene ID: k141_79185_5
Type: pfam
Location: 5291 - 6199 (-)
Type: pfam
Location: 5291 - 6199 (-)
Gene ID: k141_79185_6
Type: CAZyme
Location: 6284 - 7735 (-)
Type: CAZyme
Location: 6284 - 7735 (-)
Gene ID: k141_79185_7
Type: CAZyme
Location: 7728 - 9197 (-)
Type: CAZyme
Location: 7728 - 9197 (-)
Gene ID: k141_79185_8
Type: TC
Location: 9275 - 10567 (-)
Type: TC
Location: 9275 - 10567 (-)
Gene ID: k141_79185_9
Type: TC
Location: 10580 - 10882 (-)
Type: TC
Location: 10580 - 10882 (-)
Gene ID: k141_79185_10
Type: TC
Location: 10879 - 11211 (-)
Type: TC
Location: 10879 - 11211 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemania
Species
Holdemania filiformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_79185_5 | vegetarian > vegan | 2.44025 | 0.04411 |