Cluster: CGMR054096_CGC3
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: CGMR054096
- CGC Family ID: CGCFAM_05228
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_239154 | k141_239154_5 | 5973 | 7349 | + | 2.A.1.1.55 |
| STP | k141_239154 | k141_239154_6 | 7361 | 10669 | + | TPR_2 |
| CAZyme | k141_239154 | k141_239154_7 | 10682 | 12295 | + | GH30_4 |
| TC | k141_239154 | k141_239154_8 | 12515 | 15637 | + | 1.B.14.6.1 |
| pfam | k141_239154 | k141_239154_9 | 15664 | 17451 | + | SusD_RagB | SusD-like_3 |
| TC | k141_239154 | k141_239154_10 | 17499 | 20303 | + | 1.B.14.6.1 |
| pfam | k141_239154 | k141_239154_11 | 20341 | 22008 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | k141_239154 | k141_239154_12 | 22053 | 23654 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_239154 | k141_239154_13 | 23685 | 26453 | + | GH2 |
| CAZyme | k141_239154 | k141_239154_14 | 26801 | 28321 | + | GH105 |
| CAZyme | k141_239154 | k141_239154_15 | 28325 | 30313 | + | GH2 |
| CAZyme | k141_239154 | k141_239154_16 | 30375 | 32309 | + | PL17 |
| CAZyme | k141_239154 | k141_239154_17 | 32341 | 35097 | + | GH2 |
Gene ID: k141_239154_5
Type: TC
Location: 5973 - 7349 (+)
Type: TC
Location: 5973 - 7349 (+)
Gene ID: k141_239154_6
Type: STP
Location: 7361 - 10669 (+)
Type: STP
Location: 7361 - 10669 (+)
Gene ID: k141_239154_7
Type: CAZyme
Location: 10682 - 12295 (+)
Type: CAZyme
Location: 10682 - 12295 (+)
Gene ID: k141_239154_8
Type: TC
Location: 12515 - 15637 (+)
Type: TC
Location: 12515 - 15637 (+)
Gene ID: k141_239154_9
Type: pfam
Location: 15664 - 17451 (+)
Type: pfam
Location: 15664 - 17451 (+)
Gene ID: k141_239154_10
Type: TC
Location: 17499 - 20303 (+)
Type: TC
Location: 17499 - 20303 (+)
Gene ID: k141_239154_11
Type: pfam
Location: 20341 - 22008 (+)
Type: pfam
Location: 20341 - 22008 (+)
Gene ID: k141_239154_12
Type:
Location: 22053 - 23654 (+)
Type:
Location: 22053 - 23654 (+)
Gene ID: k141_239154_13
Type: CAZyme
Location: 23685 - 26453 (+)
Type: CAZyme
Location: 23685 - 26453 (+)
Gene ID: k141_239154_14
Type: CAZyme
Location: 26801 - 28321 (+)
Type: CAZyme
Location: 26801 - 28321 (+)
Gene ID: k141_239154_15
Type: CAZyme
Location: 28325 - 30313 (+)
Type: CAZyme
Location: 28325 - 30313 (+)
Gene ID: k141_239154_16
Type: CAZyme
Location: 30375 - 32309 (+)
Type: CAZyme
Location: 30375 - 32309 (+)
Gene ID: k141_239154_17
Type: CAZyme
Location: 32341 - 35097 (+)
Type: CAZyme
Location: 32341 - 35097 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp944321195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.