Cluster: CGMR054096_CGC23
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 11
- Substrate:
- Genome ID: CGMR054096
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_250290 | k141_250290_12 | 12324 | 14618 | - | GH3 |
| CAZyme | k141_250290 | k141_250290_13 | 14670 | 15677 | - | GH43_3 |
| CAZyme | k141_250290 | k141_250290_14 | 15692 | 18235 | - | GH31_15 |
| CAZyme | k141_250290 | k141_250290_15 | 18325 | 19347 | - | GH43_33 |
| CAZyme | k141_250290 | k141_250290_16 | 19344 | 22484 | - | GH2 |
| TF | k141_250290 | k141_250290_17 | 22629 | 26618 | - | HTH_AraC |
| pfam | k141_250290 | k141_250290_18 | 26895 | 28220 | - | NAGPA |
| CAZyme | k141_250290 | k141_250290_19 | 28244 | 29308 | - | GH43_3 |
| pfam | k141_250290 | k141_250290_20 | 29368 | 30855 | - | BT_3987-like_N | BT_3987-like_N |
| pfam | k141_250290 | k141_250290_21 | 30878 | 32884 | - | SusD_RagB | SusD-like_3 |
| TC | k141_250290 | k141_250290_22 | 32904 | 36032 | - | 1.B.14.6.1 |
| CAZyme | k141_250290 | k141_250290_23 | 36420 | 38882 | + | GH3 |
| CAZyme | k141_250290 | k141_250290_24 | 38890 | 40713 | + | GH2 |
| CAZyme | k141_250290 | k141_250290_25 | 40710 | 42716 | + | GH97 |
| CAZyme | k141_250290 | k141_250290_26 | 42730 | 45126 | + | CBM67 | GH78 |
| CAZyme | k141_250290 | k141_250290_27 | 45130 | 47082 | + | CE20 | CE20 |
Gene ID: k141_250290_12
Type: CAZyme
Location: 12324 - 14618 (-)
Type: CAZyme
Location: 12324 - 14618 (-)
Gene ID: k141_250290_13
Type: CAZyme
Location: 14670 - 15677 (-)
Type: CAZyme
Location: 14670 - 15677 (-)
Gene ID: k141_250290_14
Type: CAZyme
Location: 15692 - 18235 (-)
Type: CAZyme
Location: 15692 - 18235 (-)
Gene ID: k141_250290_15
Type: CAZyme
Location: 18325 - 19347 (-)
Type: CAZyme
Location: 18325 - 19347 (-)
Gene ID: k141_250290_16
Type: CAZyme
Location: 19344 - 22484 (-)
Type: CAZyme
Location: 19344 - 22484 (-)
Gene ID: k141_250290_17
Type: TF
Location: 22629 - 26618 (-)
Type: TF
Location: 22629 - 26618 (-)
Gene ID: k141_250290_18
Type: pfam
Location: 26895 - 28220 (-)
Type: pfam
Location: 26895 - 28220 (-)
Gene ID: k141_250290_19
Type: CAZyme
Location: 28244 - 29308 (-)
Type: CAZyme
Location: 28244 - 29308 (-)
Gene ID: k141_250290_20
Type: pfam
Location: 29368 - 30855 (-)
Type: pfam
Location: 29368 - 30855 (-)
Gene ID: k141_250290_21
Type: pfam
Location: 30878 - 32884 (-)
Type: pfam
Location: 30878 - 32884 (-)
Gene ID: k141_250290_22
Type: TC
Location: 32904 - 36032 (-)
Type: TC
Location: 32904 - 36032 (-)
Gene ID: k141_250290_23
Type: CAZyme
Location: 36420 - 38882 (+)
Type: CAZyme
Location: 36420 - 38882 (+)
Gene ID: k141_250290_24
Type: CAZyme
Location: 38890 - 40713 (+)
Type: CAZyme
Location: 38890 - 40713 (+)
Gene ID: k141_250290_25
Type: CAZyme
Location: 40710 - 42716 (+)
Type: CAZyme
Location: 40710 - 42716 (+)
Gene ID: k141_250290_26
Type: CAZyme
Location: 42730 - 45126 (+)
Type: CAZyme
Location: 42730 - 45126 (+)
Gene ID: k141_250290_27
Type: CAZyme
Location: 45130 - 47082 (+)
Type: CAZyme
Location: 45130 - 47082 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp944321195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_250290_24 | vegetarian > omnivore | 1.52436 | 0.03783 |
| k141_250290_24 | vegetarian > vegan | 1.51502 | 0.01299 |
| k141_250290_25 | vegetarian > omnivore | 1.28125 | 0.04186 |