Cluster: CGMR050004_CGC21
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR050004
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_132000 | k141_132000_1 | 57 | 398 | - | 4.A.3.2.8 |
| TC | k141_132000 | k141_132000_2 | 608 | 922 | - | 4.A.3.2.4 |
| TF | k141_132000 | k141_132000_3 | 1312 | 2013 | + | GntR |
| TF | k141_132000 | k141_132000_4 | 2068 | 2784 | - | GntR |
| CAZyme | k141_132000 | k141_132000_5 | 2966 | 4339 | + | GH1 |
| TC | k141_132000 | k141_132000_6 | 4371 | 5726 | + | 4.A.3.2.9 |
| NULL(UNKNOWN) | k141_132000 | k141_132000_7 | 5958 | 6269 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_132000 | k141_132000_8 | 6383 | 7891 | - | 3.A.1.121.3 |
| pfam | k141_132000 | k141_132000_9 | 8835 | 9827 | + | ABC_sub_bind |
| TC | k141_132000 | k141_132000_10 | 9824 | 10750 | + | 3.A.1.34.1 |
| TC | k141_132000 | k141_132000_11 | 10743 | 11507 | + | 3.A.1.34.1 |
| TC | k141_132000 | k141_132000_12 | 11826 | 12296 | - | 4.A.1.1.13 |
| TF | k141_132000 | k141_132000_13 | 12316 | 13056 | - | HTH_DeoR |
| TC | k141_132000 | k141_132000_14 | 13145 | 14536 | - | 4.A.1.2.11 |
Gene ID: k141_132000_1
Type: TC
Location: 57 - 398 (-)
Type: TC
Location: 57 - 398 (-)
Gene ID: k141_132000_2
Type: TC
Location: 608 - 922 (-)
Type: TC
Location: 608 - 922 (-)
Gene ID: k141_132000_3
Type: TF
Location: 1312 - 2013 (+)
Type: TF
Location: 1312 - 2013 (+)
Gene ID: k141_132000_4
Type: TF
Location: 2068 - 2784 (-)
Type: TF
Location: 2068 - 2784 (-)
Gene ID: k141_132000_5
Type: CAZyme
Location: 2966 - 4339 (+)
Type: CAZyme
Location: 2966 - 4339 (+)
Gene ID: k141_132000_6
Type: TC
Location: 4371 - 5726 (+)
Type: TC
Location: 4371 - 5726 (+)
Gene ID: k141_132000_7
Type:
Location: 5958 - 6269 (-)
Type:
Location: 5958 - 6269 (-)
Gene ID: k141_132000_8
Type: TC
Location: 6383 - 7891 (-)
Type: TC
Location: 6383 - 7891 (-)
Gene ID: k141_132000_9
Type: pfam
Location: 8835 - 9827 (+)
Type: pfam
Location: 8835 - 9827 (+)
Gene ID: k141_132000_10
Type: TC
Location: 9824 - 10750 (+)
Type: TC
Location: 9824 - 10750 (+)
Gene ID: k141_132000_11
Type: TC
Location: 10743 - 11507 (+)
Type: TC
Location: 10743 - 11507 (+)
Gene ID: k141_132000_12
Type: TC
Location: 11826 - 12296 (-)
Type: TC
Location: 11826 - 12296 (-)
Gene ID: k141_132000_13
Type: TF
Location: 12316 - 13056 (-)
Type: TF
Location: 12316 - 13056 (-)
Gene ID: k141_132000_14
Type: TC
Location: 13145 - 14536 (-)
Type: TC
Location: 13145 - 14536 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus parvulus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.