Cluster: CGMR049670_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR049670
- CGC Family ID: CGCFAM_03645
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_95728 | k141_95728_5 | 4679 | 5839 | - | 2.A.1.7.17 |
| pfam | k141_95728 | k141_95728_6 | 5872 | 6969 | - | MMR_HSR1 | FeoB_N | YchF-GTPase_C |
| NULL(UNKNOWN) | k141_95728 | k141_95728_7 | 7326 | 8351 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_95728 | k141_95728_8 | 8450 | 9076 | + | GT32 |
| NULL(UNKNOWN) | k141_95728 | k141_95728_9 | 9385 | 9933 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_95728 | k141_95728_10 | 9971 | 12313 | - | CBM67 | GH78 |
Gene ID: k141_95728_5
Type: TC
Location: 4679 - 5839 (-)
Type: TC
Location: 4679 - 5839 (-)
Gene ID: k141_95728_6
Type: pfam
Location: 5872 - 6969 (-)
Type: pfam
Location: 5872 - 6969 (-)
Gene ID: k141_95728_7
Type:
Location: 7326 - 8351 (+)
Type:
Location: 7326 - 8351 (+)
Gene ID: k141_95728_8
Type: CAZyme
Location: 8450 - 9076 (+)
Type: CAZyme
Location: 8450 - 9076 (+)
Gene ID: k141_95728_9
Type:
Location: 9385 - 9933 (-)
Type:
Location: 9385 - 9933 (-)
Gene ID: k141_95728_10
Type: CAZyme
Location: 9971 - 12313 (-)
Type: CAZyme
Location: 9971 - 12313 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp900549685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_95728_8 | vegetarian > omnivore | 1.84518 | 0.01386 |
| k141_95728_8 | vegetarian > vegan | 1.38802 | 0.01560 |