Cluster: CGMR045438_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: CGMR045438
- CGC Family ID: CGCFAM_00001
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_379109 | k141_379109_6 | 12504 | 15749 | + | 1.B.14.6.1 |
| pfam | k141_379109 | k141_379109_7 | 15767 | 17542 | + | SusD_RagB | SusD-like_3 |
| pfam | k141_379109 | k141_379109_8 | 17584 | 19323 | + | DUF4623 | DUF4623 |
| CAZyme | k141_379109 | k141_379109_9 | 19452 | 20636 | + | GH171 |
| TC | k141_379109 | k141_379109_10 | 20675 | 22123 | + | 2.A.21.3.7 |
| TC | k141_379109 | k141_379109_11 | 22407 | 24140 | + | 9.A.8.1.6 |
Gene ID: k141_379109_6
Type: TC
Location: 12504 - 15749 (+)
Type: TC
Location: 12504 - 15749 (+)
Gene ID: k141_379109_7
Type: pfam
Location: 15767 - 17542 (+)
Type: pfam
Location: 15767 - 17542 (+)
Gene ID: k141_379109_8
Type: pfam
Location: 17584 - 19323 (+)
Type: pfam
Location: 17584 - 19323 (+)
Gene ID: k141_379109_9
Type: CAZyme
Location: 19452 - 20636 (+)
Type: CAZyme
Location: 19452 - 20636 (+)
Gene ID: k141_379109_10
Type: TC
Location: 20675 - 22123 (+)
Type: TC
Location: 20675 - 22123 (+)
Gene ID: k141_379109_11
Type: TC
Location: 22407 - 24140 (+)
Type: TC
Location: 22407 - 24140 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Paludibacteraceae
Genus
RF16
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.