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Cluster: CGMR045438_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_1023608 k141_1023608_11 9174 11372 - GH3
NULL(UNKNOWN) k141_1023608 k141_1023608_12 11492 12685 - NULL(UNKNOWN)
[View Structural Homologs]
pfam k141_1023608 k141_1023608_13 12756 13814 - Lipase_GDSL_2
CAZyme k141_1023608 k141_1023608_14 13856 15358 - GH30_3
pfam k141_1023608 k141_1023608_15 15371 16807 - DUF5121
pfam k141_1023608 k141_1023608_16 16841 18343 - SusD_RagB | SusD-like_3
TC k141_1023608 k141_1023608_17 18372 21404 - 1.B.14.6.1
NULL(UNKNOWN) k141_1023608 k141_1023608_18 21596 21706 - NULL(UNKNOWN)
[View Structural Homologs]
pfam k141_1023608 k141_1023608_19 21770 23410 + DUF6377
TC k141_1023608 k141_1023608_20 23452 23820 - 2.A.7.34.3
Gene ID: k141_1023608_11
Type: CAZyme
Location: 9174 - 11372 (-)
Gene ID: k141_1023608_12
Type:
Location: 11492 - 12685 (-)
Gene ID: k141_1023608_13
Type: pfam
Location: 12756 - 13814 (-)
Gene ID: k141_1023608_14
Type: CAZyme
Location: 13856 - 15358 (-)
Gene ID: k141_1023608_15
Type: pfam
Location: 15371 - 16807 (-)
Gene ID: k141_1023608_16
Type: pfam
Location: 16841 - 18343 (-)
Gene ID: k141_1023608_17
Type: TC
Location: 18372 - 21404 (-)
Gene ID: k141_1023608_18
Type:
Location: 21596 - 21706 (-)
Gene ID: k141_1023608_19
Type: pfam
Location: 21770 - 23410 (+)
Gene ID: k141_1023608_20
Type: TC
Location: 23452 - 23820 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Paludibacteraceae
→
Genus
RF16
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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