Cluster: CGMR045200_CGC7
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR045200
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_6584 | k141_6584_202 | 212964 | 214376 | - | 2.A.1.3.26 |
| TC | k141_6584 | k141_6584_203 | 214373 | 217453 | - | 2.A.6.2.12 |
| TC | k141_6584 | k141_6584_204 | 217454 | 220576 | - | 2.A.6.2.12 |
| TC | k141_6584 | k141_6584_205 | 220576 | 221823 | - | 8.A.1.6.2 |
| pfam | k141_6584 | k141_6584_206 | 222261 | 223613 | - | HSP70 | HSP70 |
| STP | k141_6584 | k141_6584_207 | 223750 | 224619 | + | AlkA_N | HhH-GPD |
| TC | k141_6584 | k141_6584_208 | 224587 | 227967 | - | 9.B.34.1.1 |
| pfam | k141_6584 | k141_6584_209 | 228232 | 228873 | + | PRK |
| pfam | k141_6584 | k141_6584_210 | 228965 | 229546 | + | DCD_N | DCD |
| TC | k141_6584 | k141_6584_211 | 229573 | 231426 | + | 9.B.22.2.2 |
| TC | k141_6584 | k141_6584_212 | 231471 | 233072 | - | 2.A.109.2.3 |
| TC | k141_6584 | k141_6584_213 | 233711 | 234850 | + | 1.B.18.3.1 |
| pfam | k141_6584 | k141_6584_214 | 234856 | 235305 | + | LMWPc |
| TC | k141_6584 | k141_6584_215 | 235302 | 237464 | + | 8.A.3.3.2 |
| CAZyme | k141_6584 | k141_6584_216 | 237537 | 238379 | + | GT2 |
| pfam | k141_6584 | k141_6584_217 | 238382 | 238870 | + | Hexapep |
| CAZyme | k141_6584 | k141_6584_218 | 238867 | 240084 | + | GT4 |
| NULL(UNKNOWN) | k141_6584 | k141_6584_219 | 240059 | 241276 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_6584 | k141_6584_220 | 241282 | 242028 | + | GT2 |
Gene ID: k141_6584_202
Type: TC
Location: 212964 - 214376 (-)
Type: TC
Location: 212964 - 214376 (-)
Gene ID: k141_6584_203
Type: TC
Location: 214373 - 217453 (-)
Type: TC
Location: 214373 - 217453 (-)
Gene ID: k141_6584_204
Type: TC
Location: 217454 - 220576 (-)
Type: TC
Location: 217454 - 220576 (-)
Gene ID: k141_6584_205
Type: TC
Location: 220576 - 221823 (-)
Type: TC
Location: 220576 - 221823 (-)
Gene ID: k141_6584_206
Type: pfam
Location: 222261 - 223613 (-)
Type: pfam
Location: 222261 - 223613 (-)
Gene ID: k141_6584_207
Type: STP
Location: 223750 - 224619 (+)
Type: STP
Location: 223750 - 224619 (+)
Gene ID: k141_6584_208
Type: TC
Location: 224587 - 227967 (-)
Type: TC
Location: 224587 - 227967 (-)
Gene ID: k141_6584_209
Type: pfam
Location: 228232 - 228873 (+)
Type: pfam
Location: 228232 - 228873 (+)
Gene ID: k141_6584_210
Type: pfam
Location: 228965 - 229546 (+)
Type: pfam
Location: 228965 - 229546 (+)
Gene ID: k141_6584_211
Type: TC
Location: 229573 - 231426 (+)
Type: TC
Location: 229573 - 231426 (+)
Gene ID: k141_6584_212
Type: TC
Location: 231471 - 233072 (-)
Type: TC
Location: 231471 - 233072 (-)
Gene ID: k141_6584_213
Type: TC
Location: 233711 - 234850 (+)
Type: TC
Location: 233711 - 234850 (+)
Gene ID: k141_6584_214
Type: pfam
Location: 234856 - 235305 (+)
Type: pfam
Location: 234856 - 235305 (+)
Gene ID: k141_6584_215
Type: TC
Location: 235302 - 237464 (+)
Type: TC
Location: 235302 - 237464 (+)
Gene ID: k141_6584_216
Type: CAZyme
Location: 237537 - 238379 (+)
Type: CAZyme
Location: 237537 - 238379 (+)
Gene ID: k141_6584_217
Type: pfam
Location: 238382 - 238870 (+)
Type: pfam
Location: 238382 - 238870 (+)
Gene ID: k141_6584_218
Type: CAZyme
Location: 238867 - 240084 (+)
Type: CAZyme
Location: 238867 - 240084 (+)
Gene ID: k141_6584_219
Type:
Location: 240059 - 241276 (+)
Type:
Location: 240059 - 241276 (+)
Gene ID: k141_6584_220
Type: CAZyme
Location: 241282 - 242028 (+)
Type: CAZyme
Location: 241282 - 242028 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter freundii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.