Cluster: CGMR045200_CGC56
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 6
- Substrate:
- Genome ID: CGMR045200
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_3217 | k141_3217_74 | 71819 | 73135 | + | 2.A.8.1.4 |
| CAZyme | k141_3217 | k141_3217_75 | 73232 | 75319 | - | GH77 |
| CAZyme | k141_3217 | k141_3217_76 | 75329 | 77722 | - | GT35 |
| TF | k141_3217 | k141_3217_77 | 78341 | 81046 | + | GerE |
| TF | k141_3217 | k141_3217_78 | 81088 | 81846 | - | HTH_DeoR |
| TC | k141_3217 | k141_3217_79 | 81942 | 82772 | - | 9.B.104.1.1 |
| STP | k141_3217 | k141_3217_80 | 82943 | 83269 | - | Rhodanese |
| pfam | k141_3217 | k141_3217_81 | 83468 | 84976 | + | DAO | DAO_C |
| CAZyme | k141_3217 | k141_3217_82 | 85067 | 87514 | - | GT35 |
| CAZyme | k141_3217 | k141_3217_83 | 87534 | 88967 | - | GT5 |
| pfam | k141_3217 | k141_3217_84 | 88967 | 90262 | - | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | k141_3217 | k141_3217_85 | 90277 | 92253 | - | CBM48 | GH13_11 |
| CAZyme | k141_3217 | k141_3217_86 | 92250 | 94436 | - | CBM48 | GH13_9 |
| pfam | k141_3217 | k141_3217_87 | 94710 | 95816 | - | Semialdhyde_dh | Semialdhyde_dhC |
| TC | k141_3217 | k141_3217_88 | 96008 | 96601 | + | 2.A.95.1.5 |
| NULL(UNKNOWN) | k141_3217 | k141_3217_89 | 97629 | 98075 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_3217 | k141_3217_90 | 98171 | 99511 | - | 2.A.8.1.8 |
Gene ID: k141_3217_74
Type: TC
Location: 71819 - 73135 (+)
Type: TC
Location: 71819 - 73135 (+)
Gene ID: k141_3217_75
Type: CAZyme
Location: 73232 - 75319 (-)
Type: CAZyme
Location: 73232 - 75319 (-)
Gene ID: k141_3217_76
Type: CAZyme
Location: 75329 - 77722 (-)
Type: CAZyme
Location: 75329 - 77722 (-)
Gene ID: k141_3217_77
Type: TF
Location: 78341 - 81046 (+)
Type: TF
Location: 78341 - 81046 (+)
Gene ID: k141_3217_78
Type: TF
Location: 81088 - 81846 (-)
Type: TF
Location: 81088 - 81846 (-)
Gene ID: k141_3217_79
Type: TC
Location: 81942 - 82772 (-)
Type: TC
Location: 81942 - 82772 (-)
Gene ID: k141_3217_80
Type: STP
Location: 82943 - 83269 (-)
Type: STP
Location: 82943 - 83269 (-)
Gene ID: k141_3217_81
Type: pfam
Location: 83468 - 84976 (+)
Type: pfam
Location: 83468 - 84976 (+)
Gene ID: k141_3217_82
Type: CAZyme
Location: 85067 - 87514 (-)
Type: CAZyme
Location: 85067 - 87514 (-)
Gene ID: k141_3217_83
Type: CAZyme
Location: 87534 - 88967 (-)
Type: CAZyme
Location: 87534 - 88967 (-)
Gene ID: k141_3217_84
Type: pfam
Location: 88967 - 90262 (-)
Type: pfam
Location: 88967 - 90262 (-)
Gene ID: k141_3217_85
Type: CAZyme
Location: 90277 - 92253 (-)
Type: CAZyme
Location: 90277 - 92253 (-)
Gene ID: k141_3217_86
Type: CAZyme
Location: 92250 - 94436 (-)
Type: CAZyme
Location: 92250 - 94436 (-)
Gene ID: k141_3217_87
Type: pfam
Location: 94710 - 95816 (-)
Type: pfam
Location: 94710 - 95816 (-)
Gene ID: k141_3217_88
Type: TC
Location: 96008 - 96601 (+)
Type: TC
Location: 96008 - 96601 (+)
Gene ID: k141_3217_89
Type:
Location: 97629 - 98075 (+)
Type:
Location: 97629 - 98075 (+)
Gene ID: k141_3217_90
Type: TC
Location: 98171 - 99511 (-)
Type: TC
Location: 98171 - 99511 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter freundii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_3217_78 | vegetarian > vegan | 1.43658 | 0.01197 |