Cluster: CGMR045200_CGC46
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR045200
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_12422 | k141_12422_11 | 12464 | 13555 | - | 4.A.2.1.9 |
| TC | k141_12422 | k141_12422_12 | 13582 | 13902 | - | 4.A.2.1.9 |
| TC | k141_12422 | k141_12422_13 | 13922 | 14392 | - | 4.A.2.1.9 |
| TF | k141_12422 | k141_12422_14 | 14419 | 15972 | - | HTH_11 | Mga |
| CAZyme | k141_12422 | k141_12422_15 | 16295 | 18613 | - | GH31_3 |
| TC | k141_12422 | k141_12422_16 | 18624 | 20006 | - | 2.A.2.3.4 |
Gene ID: k141_12422_11
Type: TC
Location: 12464 - 13555 (-)
Type: TC
Location: 12464 - 13555 (-)
Gene ID: k141_12422_12
Type: TC
Location: 13582 - 13902 (-)
Type: TC
Location: 13582 - 13902 (-)
Gene ID: k141_12422_13
Type: TC
Location: 13922 - 14392 (-)
Type: TC
Location: 13922 - 14392 (-)
Gene ID: k141_12422_14
Type: TF
Location: 14419 - 15972 (-)
Type: TF
Location: 14419 - 15972 (-)
Gene ID: k141_12422_15
Type: CAZyme
Location: 16295 - 18613 (-)
Type: CAZyme
Location: 16295 - 18613 (-)
Gene ID: k141_12422_16
Type: TC
Location: 18624 - 20006 (-)
Type: TC
Location: 18624 - 20006 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter freundii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_12422_15 | vegetarian > omnivore | 1.32742 | 0.00701 |
| k141_12422_15 | vegetarian > vegan | 1.05953 | 0.01197 |
| k141_12422_16 | vegetarian > omnivore | 1.40897 | 0.03188 |