Cluster: CGMR045200_CGC42
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR045200
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_10010 | k141_10010_21 | 21919 | 23121 | - | 3.A.15.2.1 |
| TC | k141_10010 | k141_10010_22 | 23111 | 24493 | - | 3.A.15.2.1 |
| TC | k141_10010 | k141_10010_23 | 24503 | 24940 | - | 3.A.15.2.1 |
| pfam | k141_10010 | k141_10010_24 | 25184 | 26077 | - | QRPTase_C | QRPTase_N |
| pfam | k141_10010 | k141_10010_25 | 26165 | 26728 | + | Amidase_2 |
| TC | k141_10010 | k141_10010_26 | 26725 | 27579 | + | 9.B.125.1.1 |
| CAZyme | k141_10010 | k141_10010_27 | 27672 | 28622 | - | GH43_26 |
| TC | k141_10010 | k141_10010_28 | 28622 | 30028 | - | 2.A.2.3.4 |
| TC | k141_10010 | k141_10010_29 | 30186 | 31556 | - | 2.A.3.1.3 |
Gene ID: k141_10010_21
Type: TC
Location: 21919 - 23121 (-)
Type: TC
Location: 21919 - 23121 (-)
Gene ID: k141_10010_22
Type: TC
Location: 23111 - 24493 (-)
Type: TC
Location: 23111 - 24493 (-)
Gene ID: k141_10010_23
Type: TC
Location: 24503 - 24940 (-)
Type: TC
Location: 24503 - 24940 (-)
Gene ID: k141_10010_24
Type: pfam
Location: 25184 - 26077 (-)
Type: pfam
Location: 25184 - 26077 (-)
Gene ID: k141_10010_25
Type: pfam
Location: 26165 - 26728 (+)
Type: pfam
Location: 26165 - 26728 (+)
Gene ID: k141_10010_26
Type: TC
Location: 26725 - 27579 (+)
Type: TC
Location: 26725 - 27579 (+)
Gene ID: k141_10010_27
Type: CAZyme
Location: 27672 - 28622 (-)
Type: CAZyme
Location: 27672 - 28622 (-)
Gene ID: k141_10010_28
Type: TC
Location: 28622 - 30028 (-)
Type: TC
Location: 28622 - 30028 (-)
Gene ID: k141_10010_29
Type: TC
Location: 30186 - 31556 (-)
Type: TC
Location: 30186 - 31556 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter freundii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_10010_25 | omnivore > vegetarian | 2.25268 | 0.03262 |
| k141_10010_27 | vegan > omnivore | 1.37393 | 0.02581 |
| k141_10010_27 | vegetarian > omnivore | 2.87367 | 0.00744 |
| k141_10010_28 | vegetarian > omnivore | 1.48206 | 0.02546 |
| k141_10010_28 | vegetarian > vegan | 1.03624 | 0.02580 |