Cluster: CGMR035693_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR035693
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_11932 | k141_11932_63 | 55601 | 57445 | - | 3.A.1.106.2 |
| TF | k141_11932 | k141_11932_64 | 57522 | 58412 | - | HTH_AraC | HTH_AraC |
| pfam | k141_11932 | k141_11932_65 | 58516 | 58860 | + | CMD |
| CAZyme | k141_11932 | k141_11932_66 | 58933 | 59988 | - | GT9 |
Gene ID: k141_11932_63
Type: TC
Location: 55601 - 57445 (-)
Type: TC
Location: 55601 - 57445 (-)
Gene ID: k141_11932_64
Type: TF
Location: 57522 - 58412 (-)
Type: TF
Location: 57522 - 58412 (-)
Gene ID: k141_11932_65
Type: pfam
Location: 58516 - 58860 (+)
Type: pfam
Location: 58516 - 58860 (+)
Gene ID: k141_11932_66
Type: CAZyme
Location: 58933 - 59988 (-)
Type: CAZyme
Location: 58933 - 59988 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp905215245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_11932_64 | vegetarian > vegan | 1.14692 | 0.02816 |
| k141_11932_65 | vegan > omnivore | 1.22150 | 0.01144 |
| k141_11932_65 | vegetarian > omnivore | 1.53068 | 0.01077 |
| k141_11932_66 | vegetarian > omnivore | 1.01595 | 0.01077 |
| k141_11932_66 | vegetarian > vegan | 1.17215 | 0.03847 |