Cluster: CGMR035693_CGC4
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR035693
- CGC Family ID: CGCFAM_00702
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_11698 | k141_11698_1 | 1 | 2973 | + | 1.B.40.1.5 |
| CAZyme | k141_11698 | k141_11698_2 | 3129 | 3965 | + | GT8 |
| CAZyme | k141_11698 | k141_11698_3 | 3989 | 4963 | - | GT2 |
| CAZyme | k141_11698 | k141_11698_4 | 4997 | 6124 | - | GT2 |
| STP | k141_11698 | k141_11698_5 | 6340 | 7710 | + | Pyr_redox_2 |
| peptidase | k141_11698 | k141_11698_6 | 7779 | 8606 | - | C44.UPW |
| TC | k141_11698 | k141_11698_7 | 8828 | 10144 | - | 2.A.1.15.11 |
| TC | k141_11698 | k141_11698_8 | 10159 | 10866 | - | 2.A.88.8.6 |
| TC | k141_11698 | k141_11698_9 | 11105 | 13354 | + | 1.B.14.1.3 |
Gene ID: k141_11698_1
Type: TC
Location: 1 - 2973 (+)
Type: TC
Location: 1 - 2973 (+)
Gene ID: k141_11698_2
Type: CAZyme
Location: 3129 - 3965 (+)
Type: CAZyme
Location: 3129 - 3965 (+)
Gene ID: k141_11698_3
Type: CAZyme
Location: 3989 - 4963 (-)
Type: CAZyme
Location: 3989 - 4963 (-)
Gene ID: k141_11698_4
Type: CAZyme
Location: 4997 - 6124 (-)
Type: CAZyme
Location: 4997 - 6124 (-)
Gene ID: k141_11698_5
Type: STP
Location: 6340 - 7710 (+)
Type: STP
Location: 6340 - 7710 (+)
Gene ID: k141_11698_6
Type: peptidase
Location: 7779 - 8606 (-)
Type: peptidase
Location: 7779 - 8606 (-)
Gene ID: k141_11698_7
Type: TC
Location: 8828 - 10144 (-)
Type: TC
Location: 8828 - 10144 (-)
Gene ID: k141_11698_8
Type: TC
Location: 10159 - 10866 (-)
Type: TC
Location: 10159 - 10866 (-)
Gene ID: k141_11698_9
Type: TC
Location: 11105 - 13354 (+)
Type: TC
Location: 11105 - 13354 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp905215245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_11698_5 | vegetarian > omnivore | 1.31379 | 0.01077 |
| k141_11698_6 | vegan > omnivore | 1.69111 | 0.01144 |
| k141_11698_6 | vegetarian > omnivore | 1.03518 | 0.01077 |