Cluster: CGMR035693_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR035693
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_97922 | k141_97922_48 | 47673 | 48800 | + | GH102 |
| TC | k141_97922 | k141_97922_49 | 48800 | 49561 | + | 3.A.16.1.3 |
| TC | k141_97922 | k141_97922_50 | 49730 | 50698 | + | 3.A.1.15.5 |
| pfam | k141_97922 | k141_97922_51 | 50818 | 52953 | + | UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st |
| TC | k141_97922 | k141_97922_52 | 52989 | 54893 | - | 2.A.37.1.2 |
Gene ID: k141_97922_48
Type: CAZyme
Location: 47673 - 48800 (+)
Type: CAZyme
Location: 47673 - 48800 (+)
Gene ID: k141_97922_49
Type: TC
Location: 48800 - 49561 (+)
Type: TC
Location: 48800 - 49561 (+)
Gene ID: k141_97922_50
Type: TC
Location: 49730 - 50698 (+)
Type: TC
Location: 49730 - 50698 (+)
Gene ID: k141_97922_51
Type: pfam
Location: 50818 - 52953 (+)
Type: pfam
Location: 50818 - 52953 (+)
Gene ID: k141_97922_52
Type: TC
Location: 52989 - 54893 (-)
Type: TC
Location: 52989 - 54893 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp905215245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_97922_48 | vegetarian > omnivore | 1.06576 | 0.01077 |
| k141_97922_49 | vegan > omnivore | 1.47572 | 0.01144 |
| k141_97922_49 | vegetarian > omnivore | 1.46557 | 0.01077 |
| k141_97922_50 | vegan > omnivore | 1.38804 | 0.01144 |
| k141_97922_51 | vegan > omnivore | 1.31822 | 0.01144 |
| k141_97922_51 | vegetarian > omnivore | 1.31590 | 0.01077 |
| k141_97922_52 | vegetarian > omnivore | 1.06211 | 0.01077 |