Cluster: CGMR035693_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR035693
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_133618 | k141_133618_8 | 10590 | 10847 | + | 8.A.8.1.1 |
| TC | k141_133618 | k141_133618_9 | 10927 | 12654 | + | 8.A.7.1.1 |
| TC | k141_133618 | k141_133618_10 | 12714 | 13214 | + | 4.A.1.1.1 |
| pfam | k141_133618 | k141_133618_11 | 13287 | 14486 | + | PMI_typeI_cat | MPI_cupin_dom |
| CAZyme | k141_133618 | k141_133618_12 | 14606 | 17632 | + | GH2 |
Gene ID: k141_133618_8
Type: TC
Location: 10590 - 10847 (+)
Type: TC
Location: 10590 - 10847 (+)
Gene ID: k141_133618_9
Type: TC
Location: 10927 - 12654 (+)
Type: TC
Location: 10927 - 12654 (+)
Gene ID: k141_133618_10
Type: TC
Location: 12714 - 13214 (+)
Type: TC
Location: 12714 - 13214 (+)
Gene ID: k141_133618_11
Type: pfam
Location: 13287 - 14486 (+)
Type: pfam
Location: 13287 - 14486 (+)
Gene ID: k141_133618_12
Type: CAZyme
Location: 14606 - 17632 (+)
Type: CAZyme
Location: 14606 - 17632 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp905215245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_133618_8 | vegetarian > omnivore | 1.12966 | 0.01077 |
| k141_133618_9 | vegan > omnivore | 1.42049 | 0.01144 |
| k141_133618_10 | vegan > omnivore | 2.25922 | 0.01144 |
| k141_133618_10 | vegetarian > omnivore | 1.51922 | 0.01077 |