Cluster: CGMR030438_CGC8
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR030438
- CGC Family ID: CGCFAM_01404
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_45789 | k141_45789_4 | 2114 | 4720 | + | GH3 |
| pfam | k141_45789 | k141_45789_5 | 4839 | 5813 | - | PMI_typeI_cat | MPI_cupin_dom |
| CAZyme | k141_45789 | k141_45789_6 | 5890 | 7908 | - | GH13_8 |
| TC | k141_45789 | k141_45789_7 | 7994 | 10309 | - | 2.A.37.4.2 |
| CAZyme | k141_45789 | k141_45789_8 | 10492 | 12609 | - | GH2 |
| TF | k141_45789 | k141_45789_9 | 12767 | 16801 | + | HTH_AraC |
| TC | k141_45789 | k141_45789_10 | 16983 | 20066 | + | 1.B.14.6.1 |
| TC | k141_45789 | k141_45789_11 | 20092 | 21690 | + | 8.A.46.1.6 |
| CAZyme | k141_45789 | k141_45789_12 | 21728 | 23053 | + | GH105 |
| TC | k141_45789 | k141_45789_13 | 23379 | 26717 | + | 9.A.25.1.1 |
| pfam | k141_45789 | k141_45789_14 | 26770 | 29730 | - | AAA_23 | SbcC_Walker_B |
| pfam | k141_45789 | k141_45789_15 | 29727 | 30971 | - | Metallophos | SbcD_C |
| TC | k141_45789 | k141_45789_16 | 31143 | 32813 | + | 2.A.81.1.2 |
Gene ID: k141_45789_4
Type: CAZyme
Location: 2114 - 4720 (+)
Type: CAZyme
Location: 2114 - 4720 (+)
Gene ID: k141_45789_5
Type: pfam
Location: 4839 - 5813 (-)
Type: pfam
Location: 4839 - 5813 (-)
Gene ID: k141_45789_6
Type: CAZyme
Location: 5890 - 7908 (-)
Type: CAZyme
Location: 5890 - 7908 (-)
Gene ID: k141_45789_7
Type: TC
Location: 7994 - 10309 (-)
Type: TC
Location: 7994 - 10309 (-)
Gene ID: k141_45789_8
Type: CAZyme
Location: 10492 - 12609 (-)
Type: CAZyme
Location: 10492 - 12609 (-)
Gene ID: k141_45789_9
Type: TF
Location: 12767 - 16801 (+)
Type: TF
Location: 12767 - 16801 (+)
Gene ID: k141_45789_10
Type: TC
Location: 16983 - 20066 (+)
Type: TC
Location: 16983 - 20066 (+)
Gene ID: k141_45789_11
Type: TC
Location: 20092 - 21690 (+)
Type: TC
Location: 20092 - 21690 (+)
Gene ID: k141_45789_12
Type: CAZyme
Location: 21728 - 23053 (+)
Type: CAZyme
Location: 21728 - 23053 (+)
Gene ID: k141_45789_13
Type: TC
Location: 23379 - 26717 (+)
Type: TC
Location: 23379 - 26717 (+)
Gene ID: k141_45789_14
Type: pfam
Location: 26770 - 29730 (-)
Type: pfam
Location: 26770 - 29730 (-)
Gene ID: k141_45789_15
Type: pfam
Location: 29727 - 30971 (-)
Type: pfam
Location: 29727 - 30971 (-)
Gene ID: k141_45789_16
Type: TC
Location: 31143 - 32813 (+)
Type: TC
Location: 31143 - 32813 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides merdae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_45789_11 | vegetarian > vegan | 1.14817 | 0.00455 |