Cluster: CGMR030438_CGC45
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR030438
- CGC Family ID: CGCFAM_07490
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_109207 | k141_109207_10 | 12263 | 12946 | + | 3.A.1.122.2 |
| TC | k141_109207 | k141_109207_11 | 12939 | 14204 | + | 3.A.1.122.1 |
| TC | k141_109207 | k141_109207_12 | 14229 | 15497 | + | 3.A.1.122.12 |
| pfam | k141_109207 | k141_109207_13 | 15584 | 16705 | + | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23 |
| pfam | k141_109207 | k141_109207_14 | 16753 | 18072 | + | OEP | OEP |
| CAZyme | k141_109207 | k141_109207_15 | 18240 | 20240 | + | GH97 |
| CAZyme | k141_109207 | k141_109207_16 | 20179 | 21150 | + | GH97 |
| pfam | k141_109207 | k141_109207_17 | 21099 | 21371 | + | GH97_C |
| TF | k141_109207 | k141_109207_18 | 21432 | 21836 | - | HTH_AraC | HTH_AraC |
| CAZyme | k141_109207 | k141_109207_19 | 22123 | 23094 | + | CBM32 |
| pfam | k141_109207 | k141_109207_20 | 23110 | 24270 | - | DUF4934 | DUF5128 |
| pfam | k141_109207 | k141_109207_21 | 24368 | 26560 | - | Gln-synt_C | GSIII_N | Gln-synt_C-ter |
| TC | k141_109207 | k141_109207_22 | 27026 | 29230 | - | 3.A.10.1.10 |
| pfam | k141_109207 | k141_109207_23 | 29411 | 30250 | + | Patatin |
| CAZyme | k141_109207 | k141_109207_24 | 30309 | 32000 | + | GH13_38 |
Gene ID: k141_109207_10
Type: TC
Location: 12263 - 12946 (+)
Type: TC
Location: 12263 - 12946 (+)
Gene ID: k141_109207_11
Type: TC
Location: 12939 - 14204 (+)
Type: TC
Location: 12939 - 14204 (+)
Gene ID: k141_109207_12
Type: TC
Location: 14229 - 15497 (+)
Type: TC
Location: 14229 - 15497 (+)
Gene ID: k141_109207_13
Type: pfam
Location: 15584 - 16705 (+)
Type: pfam
Location: 15584 - 16705 (+)
Gene ID: k141_109207_14
Type: pfam
Location: 16753 - 18072 (+)
Type: pfam
Location: 16753 - 18072 (+)
Gene ID: k141_109207_15
Type: CAZyme
Location: 18240 - 20240 (+)
Type: CAZyme
Location: 18240 - 20240 (+)
Gene ID: k141_109207_16
Type: CAZyme
Location: 20179 - 21150 (+)
Type: CAZyme
Location: 20179 - 21150 (+)
Gene ID: k141_109207_17
Type: pfam
Location: 21099 - 21371 (+)
Type: pfam
Location: 21099 - 21371 (+)
Gene ID: k141_109207_18
Type: TF
Location: 21432 - 21836 (-)
Type: TF
Location: 21432 - 21836 (-)
Gene ID: k141_109207_19
Type: CAZyme
Location: 22123 - 23094 (+)
Type: CAZyme
Location: 22123 - 23094 (+)
Gene ID: k141_109207_20
Type: pfam
Location: 23110 - 24270 (-)
Type: pfam
Location: 23110 - 24270 (-)
Gene ID: k141_109207_21
Type: pfam
Location: 24368 - 26560 (-)
Type: pfam
Location: 24368 - 26560 (-)
Gene ID: k141_109207_22
Type: TC
Location: 27026 - 29230 (-)
Type: TC
Location: 27026 - 29230 (-)
Gene ID: k141_109207_23
Type: pfam
Location: 29411 - 30250 (+)
Type: pfam
Location: 29411 - 30250 (+)
Gene ID: k141_109207_24
Type: CAZyme
Location: 30309 - 32000 (+)
Type: CAZyme
Location: 30309 - 32000 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides merdae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.