Cluster: CGMR030438_CGC42
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: CGMR030438
- CGC Family ID: CGCFAM_00001
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_49261 | k141_49261_18 | 21523 | 24888 | + | 1.B.14.6.1 |
| pfam | k141_49261 | k141_49261_19 | 24909 | 26381 | + | SusD_RagB | SusD-like_3 |
| CAZyme | k141_49261 | k141_49261_20 | 26491 | 29259 | + | GH2 |
| TC | k141_49261 | k141_49261_21 | 29552 | 32737 | + | 1.B.14.6.1 |
| TC | k141_49261 | k141_49261_22 | 32752 | 34236 | + | 8.A.46.1.3 |
| CAZyme | k141_49261 | k141_49261_23 | 34378 | 36663 | + | GH92 |
Gene ID: k141_49261_18
Type: TC
Location: 21523 - 24888 (+)
Type: TC
Location: 21523 - 24888 (+)
Gene ID: k141_49261_19
Type: pfam
Location: 24909 - 26381 (+)
Type: pfam
Location: 24909 - 26381 (+)
Gene ID: k141_49261_20
Type: CAZyme
Location: 26491 - 29259 (+)
Type: CAZyme
Location: 26491 - 29259 (+)
Gene ID: k141_49261_21
Type: TC
Location: 29552 - 32737 (+)
Type: TC
Location: 29552 - 32737 (+)
Gene ID: k141_49261_22
Type: TC
Location: 32752 - 34236 (+)
Type: TC
Location: 32752 - 34236 (+)
Gene ID: k141_49261_23
Type: CAZyme
Location: 34378 - 36663 (+)
Type: CAZyme
Location: 34378 - 36663 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides merdae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_49261_18 | vegetarian > vegan | 1.00101 | 0.00455 |