Cluster: CGMR030438_CGC38
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 6
- Substrate:
- Genome ID: CGMR030438
- CGC Family ID: CGCFAM_02082
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_130169 | k141_130169_30 | 32536 | 34857 | + | GH92 |
| CAZyme | k141_130169 | k141_130169_31 | 34872 | 36524 | + | GH156 |
| CAZyme | k141_130169 | k141_130169_32 | 36938 | 38407 | - | GH28 |
| CAZyme | k141_130169 | k141_130169_33 | 38458 | 41340 | - | GH106 |
| CAZyme | k141_130169 | k141_130169_34 | 41357 | 42109 | - | GH28 |
| CAZyme | k141_130169 | k141_130169_35 | 42167 | 43648 | - | GH28 |
| pfam | k141_130169 | k141_130169_36 | 43811 | 45238 | + | PD40 | PD40 |
| pfam | k141_130169 | k141_130169_37 | 45252 | 46937 | + | DUF6057 |
| TC | k141_130169 | k141_130169_38 | 47009 | 48850 | - | 8.A.46.1.6 |
| TC | k141_130169 | k141_130169_39 | 48864 | 52022 | - | 1.B.14.6.1 |
Gene ID: k141_130169_30
Type: CAZyme
Location: 32536 - 34857 (+)
Type: CAZyme
Location: 32536 - 34857 (+)
Gene ID: k141_130169_31
Type: CAZyme
Location: 34872 - 36524 (+)
Type: CAZyme
Location: 34872 - 36524 (+)
Gene ID: k141_130169_32
Type: CAZyme
Location: 36938 - 38407 (-)
Type: CAZyme
Location: 36938 - 38407 (-)
Gene ID: k141_130169_33
Type: CAZyme
Location: 38458 - 41340 (-)
Type: CAZyme
Location: 38458 - 41340 (-)
Gene ID: k141_130169_34
Type: CAZyme
Location: 41357 - 42109 (-)
Type: CAZyme
Location: 41357 - 42109 (-)
Gene ID: k141_130169_35
Type: CAZyme
Location: 42167 - 43648 (-)
Type: CAZyme
Location: 42167 - 43648 (-)
Gene ID: k141_130169_36
Type: pfam
Location: 43811 - 45238 (+)
Type: pfam
Location: 43811 - 45238 (+)
Gene ID: k141_130169_37
Type: pfam
Location: 45252 - 46937 (+)
Type: pfam
Location: 45252 - 46937 (+)
Gene ID: k141_130169_38
Type: TC
Location: 47009 - 48850 (-)
Type: TC
Location: 47009 - 48850 (-)
Gene ID: k141_130169_39
Type: TC
Location: 48864 - 52022 (-)
Type: TC
Location: 48864 - 52022 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides merdae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_130169_33 | vegetarian > omnivore | 1.05571 | 0.00085 |
| k141_130169_34 | vegetarian > omnivore | 1.28018 | 0.00085 |
| k141_130169_35 | vegetarian > omnivore | 1.12490 | 0.00085 |
| k141_130169_36 | vegetarian > omnivore | 1.26430 | 0.00085 |
| k141_130169_37 | vegetarian > omnivore | 1.41540 | 0.00085 |