Cluster: CGMR025896_CGC2
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR025896
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_2895 | k141_2895_35 | 42301 | 45459 | + | 1.B.14.6.2 |
| pfam | k141_2895 | k141_2895_36 | 45475 | 47001 | + | SusD-like | SusD-like_2 |
| CAZyme | k141_2895 | k141_2895_37 | 47027 | 47893 | + | GH16_3 |
| TF | k141_2895 | k141_2895_38 | 48119 | 48844 | + | GntR |
| NULL(UNKNOWN) | k141_2895 | k141_2895_39 | 49028 | 50803 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_2895 | k141_2895_40 | 50830 | 52005 | + | 2.A.1.7.16 |
| sulfatase | k141_2895 | k141_2895_41 | 51989 | 53098 | + | S1_7 |
| TC | k141_2895 | k141_2895_42 | 53134 | 56193 | + | 1.B.14.6.1 |
| TC | k141_2895 | k141_2895_43 | 56220 | 57761 | + | 8.A.46.1.3 |
| CAZyme | k141_2895 | k141_2895_44 | 57780 | 60503 | + | GH92 |
| NULL(UNKNOWN) | k141_2895 | k141_2895_45 | 60525 | 60989 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_2895 | k141_2895_46 | 61001 | 61969 | + | DUF4961 |
| CAZyme | k141_2895 | k141_2895_47 | 61974 | 63404 | + | CE20 |
Gene ID: k141_2895_35
Type: TC
Location: 42301 - 45459 (+)
Type: TC
Location: 42301 - 45459 (+)
Gene ID: k141_2895_36
Type: pfam
Location: 45475 - 47001 (+)
Type: pfam
Location: 45475 - 47001 (+)
Gene ID: k141_2895_37
Type: CAZyme
Location: 47027 - 47893 (+)
Type: CAZyme
Location: 47027 - 47893 (+)
Gene ID: k141_2895_38
Type: TF
Location: 48119 - 48844 (+)
Type: TF
Location: 48119 - 48844 (+)
Gene ID: k141_2895_39
Type:
Location: 49028 - 50803 (+)
Type:
Location: 49028 - 50803 (+)
Gene ID: k141_2895_40
Type: TC
Location: 50830 - 52005 (+)
Type: TC
Location: 50830 - 52005 (+)
Gene ID: k141_2895_41
Type: sulfatase
Location: 51989 - 53098 (+)
Type: sulfatase
Location: 51989 - 53098 (+)
Gene ID: k141_2895_42
Type: TC
Location: 53134 - 56193 (+)
Type: TC
Location: 53134 - 56193 (+)
Gene ID: k141_2895_43
Type: TC
Location: 56220 - 57761 (+)
Type: TC
Location: 56220 - 57761 (+)
Gene ID: k141_2895_44
Type: CAZyme
Location: 57780 - 60503 (+)
Type: CAZyme
Location: 57780 - 60503 (+)
Gene ID: k141_2895_45
Type:
Location: 60525 - 60989 (+)
Type:
Location: 60525 - 60989 (+)
Gene ID: k141_2895_46
Type: pfam
Location: 61001 - 61969 (+)
Type: pfam
Location: 61001 - 61969 (+)
Gene ID: k141_2895_47
Type: CAZyme
Location: 61974 - 63404 (+)
Type: CAZyme
Location: 61974 - 63404 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp001941065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_2895_42 | vegan > omnivore | 2.35916 | 0.00450 |