Cluster: CGMR023366_CGC7
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 8
- Substrate:
- Genome ID: CGMR023366
- CGC Family ID: CGCFAM_08389
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_123271 | k141_123271_5 | 4054 | 5124 | + | GT4 |
| CAZyme | k141_123271 | k141_123271_6 | 5135 | 6217 | + | GT4 |
| pfam | k141_123271 | k141_123271_7 | 6214 | 7377 | + | ATP-grasp_3 | CPSase_L_D2 | ATPgrasp_Ter |
| pfam | k141_123271 | k141_123271_8 | 7383 | 8333 | + | Acyl_transf_3 |
| CAZyme | k141_123271 | k141_123271_9 | 8339 | 9187 | + | CE4 |
| CAZyme | k141_123271 | k141_123271_10 | 9289 | 10866 | - | GH20 |
| pfam | k141_123271 | k141_123271_11 | 10880 | 12073 | - | Lipase_GDSL_2 |
| pfam | k141_123271 | k141_123271_12 | 12124 | 14271 | - | Fib_succ_major | SusE | SusE | SusE |
| CAZyme | k141_123271 | k141_123271_13 | 14283 | 15986 | - | GH136 |
| pfam | k141_123271 | k141_123271_14 | 16006 | 17124 | - | Fib_succ_major |
| TC | k141_123271 | k141_123271_15 | 17143 | 18750 | - | 8.A.46.3.2 |
| TC | k141_123271 | k141_123271_16 | 18754 | 21831 | - | 1.B.14.6.1 |
| CAZyme | k141_123271 | k141_123271_17 | 21888 | 23000 | - | GH43_24 |
| CAZyme | k141_123271 | k141_123271_18 | 23009 | 24868 | - | GH110 |
| CAZyme | k141_123271 | k141_123271_19 | 24879 | 26720 | - | GH110 |
Gene ID: k141_123271_5
Type: CAZyme
Location: 4054 - 5124 (+)
Type: CAZyme
Location: 4054 - 5124 (+)
Gene ID: k141_123271_6
Type: CAZyme
Location: 5135 - 6217 (+)
Type: CAZyme
Location: 5135 - 6217 (+)
Gene ID: k141_123271_7
Type: pfam
Location: 6214 - 7377 (+)
Type: pfam
Location: 6214 - 7377 (+)
Gene ID: k141_123271_8
Type: pfam
Location: 7383 - 8333 (+)
Type: pfam
Location: 7383 - 8333 (+)
Gene ID: k141_123271_9
Type: CAZyme
Location: 8339 - 9187 (+)
Type: CAZyme
Location: 8339 - 9187 (+)
Gene ID: k141_123271_10
Type: CAZyme
Location: 9289 - 10866 (-)
Type: CAZyme
Location: 9289 - 10866 (-)
Gene ID: k141_123271_11
Type: pfam
Location: 10880 - 12073 (-)
Type: pfam
Location: 10880 - 12073 (-)
Gene ID: k141_123271_12
Type: pfam
Location: 12124 - 14271 (-)
Type: pfam
Location: 12124 - 14271 (-)
Gene ID: k141_123271_13
Type: CAZyme
Location: 14283 - 15986 (-)
Type: CAZyme
Location: 14283 - 15986 (-)
Gene ID: k141_123271_14
Type: pfam
Location: 16006 - 17124 (-)
Type: pfam
Location: 16006 - 17124 (-)
Gene ID: k141_123271_15
Type: TC
Location: 17143 - 18750 (-)
Type: TC
Location: 17143 - 18750 (-)
Gene ID: k141_123271_16
Type: TC
Location: 18754 - 21831 (-)
Type: TC
Location: 18754 - 21831 (-)
Gene ID: k141_123271_17
Type: CAZyme
Location: 21888 - 23000 (-)
Type: CAZyme
Location: 21888 - 23000 (-)
Gene ID: k141_123271_18
Type: CAZyme
Location: 23009 - 24868 (-)
Type: CAZyme
Location: 23009 - 24868 (-)
Gene ID: k141_123271_19
Type: CAZyme
Location: 24879 - 26720 (-)
Type: CAZyme
Location: 24879 - 26720 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes timonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.