Cluster: CGMR017525_CGC5
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR017525
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_47492 | k141_47492_18 | 20029 | 20922 | + | GH5_44 |
| TF | k141_47492 | k141_47492_19 | 21045 | 21791 | - | HTH_6 |
| TF | k141_47492 | k141_47492_20 | 22025 | 22798 | + | HTH_6 |
| CAZyme | k141_47492 | k141_47492_21 | 23007 | 24446 | + | GH1 |
| TC | k141_47492 | k141_47492_22 | 24495 | 24809 | + | 4.A.3.2.3 |
| CAZyme | k141_47492 | k141_47492_23 | 24955 | 27069 | - | GH13_11 |
| STP | k141_47492 | k141_47492_24 | 27254 | 28771 | + | Pribosyltran |
| TC | k141_47492 | k141_47492_25 | 28884 | 29714 | + | 3.A.1.132.3 |
Gene ID: k141_47492_18
Type: CAZyme
Location: 20029 - 20922 (+)
Type: CAZyme
Location: 20029 - 20922 (+)
Gene ID: k141_47492_19
Type: TF
Location: 21045 - 21791 (-)
Type: TF
Location: 21045 - 21791 (-)
Gene ID: k141_47492_20
Type: TF
Location: 22025 - 22798 (+)
Type: TF
Location: 22025 - 22798 (+)
Gene ID: k141_47492_21
Type: CAZyme
Location: 23007 - 24446 (+)
Type: CAZyme
Location: 23007 - 24446 (+)
Gene ID: k141_47492_22
Type: TC
Location: 24495 - 24809 (+)
Type: TC
Location: 24495 - 24809 (+)
Gene ID: k141_47492_23
Type: CAZyme
Location: 24955 - 27069 (-)
Type: CAZyme
Location: 24955 - 27069 (-)
Gene ID: k141_47492_24
Type: STP
Location: 27254 - 28771 (+)
Type: STP
Location: 27254 - 28771 (+)
Gene ID: k141_47492_25
Type: TC
Location: 28884 - 29714 (+)
Type: TC
Location: 28884 - 29714 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter vanvlietii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.