Cluster: CGMR013258_CGC19
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR013258
- CGC Family ID: CGCFAM_00270
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_346012 | k141_346012_12 | 13484 | 14557 | + | 3.A.1.11.8 |
| TC | k141_346012 | k141_346012_13 | 14550 | 15374 | + | 3.A.1.11.8 |
| TC | k141_346012 | k141_346012_14 | 15368 | 16153 | + | 3.A.1.11.7 |
| TC | k141_346012 | k141_346012_15 | 16172 | 17245 | + | 3.A.1.11.7 |
| pfam | k141_346012 | k141_346012_16 | 17419 | 18309 | + | DUF5688 |
| CAZyme | k141_346012 | k141_346012_17 | 18418 | 19866 | - | GT5 |
| STP | k141_346012 | k141_346012_18 | 19903 | 20697 | - | Response_reg | Spo0A_C |
| TC | k141_346012 | k141_346012_19 | 21127 | 22065 | - | 2.A.19.5.2 |
| NULL(UNKNOWN) | k141_346012 | k141_346012_20 | 22303 | 22569 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | k141_346012 | k141_346012_21 | 22672 | 22959 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_346012 | k141_346012_22 | 23134 | 24420 | + | 3.A.1.1.21 |
| TC | k141_346012 | k141_346012_23 | 24533 | 25414 | + | 3.A.1.1.7 |
| TC | k141_346012 | k141_346012_24 | 25415 | 26239 | + | 3.A.1.1.41 |
Gene ID: k141_346012_12
Type: TC
Location: 13484 - 14557 (+)
Type: TC
Location: 13484 - 14557 (+)
Gene ID: k141_346012_13
Type: TC
Location: 14550 - 15374 (+)
Type: TC
Location: 14550 - 15374 (+)
Gene ID: k141_346012_14
Type: TC
Location: 15368 - 16153 (+)
Type: TC
Location: 15368 - 16153 (+)
Gene ID: k141_346012_15
Type: TC
Location: 16172 - 17245 (+)
Type: TC
Location: 16172 - 17245 (+)
Gene ID: k141_346012_16
Type: pfam
Location: 17419 - 18309 (+)
Type: pfam
Location: 17419 - 18309 (+)
Gene ID: k141_346012_17
Type: CAZyme
Location: 18418 - 19866 (-)
Type: CAZyme
Location: 18418 - 19866 (-)
Gene ID: k141_346012_18
Type: STP
Location: 19903 - 20697 (-)
Type: STP
Location: 19903 - 20697 (-)
Gene ID: k141_346012_19
Type: TC
Location: 21127 - 22065 (-)
Type: TC
Location: 21127 - 22065 (-)
Gene ID: k141_346012_20
Type:
Location: 22303 - 22569 (-)
Type:
Location: 22303 - 22569 (-)
Gene ID: k141_346012_21
Type:
Location: 22672 - 22959 (+)
Type:
Location: 22672 - 22959 (+)
Gene ID: k141_346012_22
Type: TC
Location: 23134 - 24420 (+)
Type: TC
Location: 23134 - 24420 (+)
Gene ID: k141_346012_23
Type: TC
Location: 24533 - 25414 (+)
Type: TC
Location: 24533 - 25414 (+)
Gene ID: k141_346012_24
Type: TC
Location: 25415 - 26239 (+)
Type: TC
Location: 25415 - 26239 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp000434275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.