Cluster: CGMR012624_CGC56
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 7
- Substrate:
- Genome ID: CGMR012624
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_139805 | k141_139805_64 | 83900 | 85327 | - | CE19 |
| CAZyme | k141_139805 | k141_139805_65 | 85333 | 86763 | - | GH28 |
| CAZyme | k141_139805 | k141_139805_66 | 86760 | 88295 | - | GH28 |
| CAZyme | k141_139805 | k141_139805_67 | 88297 | 91443 | - | GH2 |
| sulfatase | k141_139805 | k141_139805_68 | 91469 | 92569 | - | S1_16 |
| TC | k141_139805 | k141_139805_69 | 92592 | 94148 | - | 8.A.46.3.3 |
| TC | k141_139805 | k141_139805_70 | 94164 | 97310 | - | 1.B.14.6.1 |
| CAZyme | k141_139805 | k141_139805_71 | 97446 | 100427 | - | GH2 |
| TF | k141_139805 | k141_139805_72 | 100584 | 104624 | + | HTH_AraC |
| CAZyme | k141_139805 | k141_139805_73 | 104716 | 107085 | + | GH2 |
| CAZyme | k141_139805 | k141_139805_74 | 107086 | 109668 | + | GH2 |
| NULL(UNKNOWN) | k141_139805 | k141_139805_75 | 109652 | 109795 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_139805 | k141_139805_76 | 110055 | 111527 | - | IU_nuc_hydro | FmdE |
| TC | k141_139805 | k141_139805_77 | 111541 | 113427 | - | 1.B.14.3.1 |
| TC | k141_139805 | k141_139805_78 | 113612 | 115576 | + | 2.A.1.1.1 |
| TC | k141_139805 | k141_139805_79 | 115580 | 116341 | - | 3.A.1.23.8 |
| pfam | k141_139805 | k141_139805_80 | 116343 | 117158 | - | CbiQ |
| TC | k141_139805 | k141_139805_81 | 117155 | 118141 | - | 3.A.1.23.5 |
Gene ID: k141_139805_64
Type: CAZyme
Location: 83900 - 85327 (-)
Type: CAZyme
Location: 83900 - 85327 (-)
Gene ID: k141_139805_65
Type: CAZyme
Location: 85333 - 86763 (-)
Type: CAZyme
Location: 85333 - 86763 (-)
Gene ID: k141_139805_66
Type: CAZyme
Location: 86760 - 88295 (-)
Type: CAZyme
Location: 86760 - 88295 (-)
Gene ID: k141_139805_67
Type: CAZyme
Location: 88297 - 91443 (-)
Type: CAZyme
Location: 88297 - 91443 (-)
Gene ID: k141_139805_68
Type: sulfatase
Location: 91469 - 92569 (-)
Type: sulfatase
Location: 91469 - 92569 (-)
Gene ID: k141_139805_69
Type: TC
Location: 92592 - 94148 (-)
Type: TC
Location: 92592 - 94148 (-)
Gene ID: k141_139805_70
Type: TC
Location: 94164 - 97310 (-)
Type: TC
Location: 94164 - 97310 (-)
Gene ID: k141_139805_71
Type: CAZyme
Location: 97446 - 100427 (-)
Type: CAZyme
Location: 97446 - 100427 (-)
Gene ID: k141_139805_72
Type: TF
Location: 100584 - 104624 (+)
Type: TF
Location: 100584 - 104624 (+)
Gene ID: k141_139805_73
Type: CAZyme
Location: 104716 - 107085 (+)
Type: CAZyme
Location: 104716 - 107085 (+)
Gene ID: k141_139805_74
Type: CAZyme
Location: 107086 - 109668 (+)
Type: CAZyme
Location: 107086 - 109668 (+)
Gene ID: k141_139805_75
Type:
Location: 109652 - 109795 (-)
Type:
Location: 109652 - 109795 (-)
Gene ID: k141_139805_76
Type: pfam
Location: 110055 - 111527 (-)
Type: pfam
Location: 110055 - 111527 (-)
Gene ID: k141_139805_77
Type: TC
Location: 111541 - 113427 (-)
Type: TC
Location: 111541 - 113427 (-)
Gene ID: k141_139805_78
Type: TC
Location: 113612 - 115576 (+)
Type: TC
Location: 113612 - 115576 (+)
Gene ID: k141_139805_79
Type: TC
Location: 115580 - 116341 (-)
Type: TC
Location: 115580 - 116341 (-)
Gene ID: k141_139805_80
Type: pfam
Location: 116343 - 117158 (-)
Type: pfam
Location: 116343 - 117158 (-)
Gene ID: k141_139805_81
Type: TC
Location: 117155 - 118141 (-)
Type: TC
Location: 117155 - 118141 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes provencensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_139805_76 | vegan > omnivore | 1.60001 | 0.04081 |
| k141_139805_78 | vegan > omnivore | 1.24217 | 0.04081 |
| k141_139805_79 | vegan > omnivore | 1.24685 | 0.04081 |