Cluster: CGMR012624_CGC4
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR012624
- CGC Family ID: CGCFAM_03728
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_33437 | k141_33437_52 | 74018 | 75445 | - | CE20 |
| pfam | k141_33437 | k141_33437_53 | 75456 | 76424 | - | DUF4961 |
| NULL(UNKNOWN) | k141_33437 | k141_33437_54 | 76436 | 76900 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_33437 | k141_33437_55 | 76922 | 79642 | - | GH92 |
| TC | k141_33437 | k141_33437_56 | 79661 | 81202 | - | 8.A.46.1.3 |
| TC | k141_33437 | k141_33437_57 | 81229 | 84288 | - | 1.B.14.6.1 |
| sulfatase | k141_33437 | k141_33437_58 | 84328 | 85437 | - | S1_7 |
| TC | k141_33437 | k141_33437_59 | 85424 | 86596 | - | 2.A.1.7.16 |
| NULL(UNKNOWN) | k141_33437 | k141_33437_60 | 86624 | 88429 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | k141_33437 | k141_33437_61 | 88583 | 89320 | - | GntR |
| CAZyme | k141_33437 | k141_33437_62 | 89534 | 90349 | - | GH16_3 |
| pfam | k141_33437 | k141_33437_63 | 90421 | 91956 | - | SusD-like | SusD-like_2 |
| TC | k141_33437 | k141_33437_64 | 91972 | 95130 | - | 1.B.14.6.2 |
Gene ID: k141_33437_52
Type: CAZyme
Location: 74018 - 75445 (-)
Type: CAZyme
Location: 74018 - 75445 (-)
Gene ID: k141_33437_53
Type: pfam
Location: 75456 - 76424 (-)
Type: pfam
Location: 75456 - 76424 (-)
Gene ID: k141_33437_54
Type:
Location: 76436 - 76900 (-)
Type:
Location: 76436 - 76900 (-)
Gene ID: k141_33437_55
Type: CAZyme
Location: 76922 - 79642 (-)
Type: CAZyme
Location: 76922 - 79642 (-)
Gene ID: k141_33437_56
Type: TC
Location: 79661 - 81202 (-)
Type: TC
Location: 79661 - 81202 (-)
Gene ID: k141_33437_57
Type: TC
Location: 81229 - 84288 (-)
Type: TC
Location: 81229 - 84288 (-)
Gene ID: k141_33437_58
Type: sulfatase
Location: 84328 - 85437 (-)
Type: sulfatase
Location: 84328 - 85437 (-)
Gene ID: k141_33437_59
Type: TC
Location: 85424 - 86596 (-)
Type: TC
Location: 85424 - 86596 (-)
Gene ID: k141_33437_60
Type:
Location: 86624 - 88429 (-)
Type:
Location: 86624 - 88429 (-)
Gene ID: k141_33437_61
Type: TF
Location: 88583 - 89320 (-)
Type: TF
Location: 88583 - 89320 (-)
Gene ID: k141_33437_62
Type: CAZyme
Location: 89534 - 90349 (-)
Type: CAZyme
Location: 89534 - 90349 (-)
Gene ID: k141_33437_63
Type: pfam
Location: 90421 - 91956 (-)
Type: pfam
Location: 90421 - 91956 (-)
Gene ID: k141_33437_64
Type: TC
Location: 91972 - 95130 (-)
Type: TC
Location: 91972 - 95130 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes provencensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.