Cluster: CGMR012624_CGC29
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate:
- Genome ID: CGMR012624
- CGC Family ID: CGCFAM_08255
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_115041 | k141_115041_34 | 53231 | 54706 | - | 8.A.46.2.1 |
| TC | k141_115041 | k141_115041_35 | 54720 | 58286 | - | 1.B.14.6.2 |
| STP | k141_115041 | k141_115041_36 | 58450 | 59394 | - | FecR |
| STP | k141_115041 | k141_115041_37 | 59464 | 60051 | - | Sigma70_r2 | Sigma70_r4_2 |
| TC | k141_115041 | k141_115041_38 | 60175 | 61320 | - | 3.A.1.13.2 |
| TF | k141_115041 | k141_115041_39 | 62194 | 62814 | + | GerE |
| STP | k141_115041 | k141_115041_40 | 62935 | 63930 | + | FecR |
| TC | k141_115041 | k141_115041_41 | 64012 | 67248 | + | 1.B.14.6.1 |
| TC | k141_115041 | k141_115041_42 | 67274 | 68752 | + | 8.A.46.1.3 |
| NULL(UNKNOWN) | k141_115041 | k141_115041_43 | 68771 | 70498 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_115041 | k141_115041_44 | 70523 | 72241 | + | GH123 |
| CAZyme | k141_115041 | k141_115041_45 | 72279 | 74330 | + | GH20 |
| sulfatase | k141_115041 | k141_115041_46 | 74344 | 75846 | + | S1_15 |
| CAZyme | k141_115041 | k141_115041_47 | 75927 | 78641 | + | CBM67 | GH78 |
| CAZyme | k141_115041 | k141_115041_48 | 78799 | 81540 | + | CBM67 | GH78 |
| CAZyme | k141_115041 | k141_115041_49 | 81578 | 83218 | - | GH20 |
Gene ID: k141_115041_34
Type: TC
Location: 53231 - 54706 (-)
Type: TC
Location: 53231 - 54706 (-)
Gene ID: k141_115041_35
Type: TC
Location: 54720 - 58286 (-)
Type: TC
Location: 54720 - 58286 (-)
Gene ID: k141_115041_36
Type: STP
Location: 58450 - 59394 (-)
Type: STP
Location: 58450 - 59394 (-)
Gene ID: k141_115041_37
Type: STP
Location: 59464 - 60051 (-)
Type: STP
Location: 59464 - 60051 (-)
Gene ID: k141_115041_38
Type: TC
Location: 60175 - 61320 (-)
Type: TC
Location: 60175 - 61320 (-)
Gene ID: k141_115041_39
Type: TF
Location: 62194 - 62814 (+)
Type: TF
Location: 62194 - 62814 (+)
Gene ID: k141_115041_40
Type: STP
Location: 62935 - 63930 (+)
Type: STP
Location: 62935 - 63930 (+)
Gene ID: k141_115041_41
Type: TC
Location: 64012 - 67248 (+)
Type: TC
Location: 64012 - 67248 (+)
Gene ID: k141_115041_42
Type: TC
Location: 67274 - 68752 (+)
Type: TC
Location: 67274 - 68752 (+)
Gene ID: k141_115041_43
Type:
Location: 68771 - 70498 (+)
Type:
Location: 68771 - 70498 (+)
Gene ID: k141_115041_44
Type: CAZyme
Location: 70523 - 72241 (+)
Type: CAZyme
Location: 70523 - 72241 (+)
Gene ID: k141_115041_45
Type: CAZyme
Location: 72279 - 74330 (+)
Type: CAZyme
Location: 72279 - 74330 (+)
Gene ID: k141_115041_46
Type: sulfatase
Location: 74344 - 75846 (+)
Type: sulfatase
Location: 74344 - 75846 (+)
Gene ID: k141_115041_47
Type: CAZyme
Location: 75927 - 78641 (+)
Type: CAZyme
Location: 75927 - 78641 (+)
Gene ID: k141_115041_48
Type: CAZyme
Location: 78799 - 81540 (+)
Type: CAZyme
Location: 78799 - 81540 (+)
Gene ID: k141_115041_49
Type: CAZyme
Location: 81578 - 83218 (-)
Type: CAZyme
Location: 81578 - 83218 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes provencensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.