Cluster: CGMR012624_CGC28
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR012624
- CGC Family ID: CGCFAM_08254
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_115041 | k141_115041_17 | 17895 | 19826 | - | GH97 |
| CAZyme | k141_115041 | k141_115041_18 | 19840 | 21372 | - | GH16_3 |
| NULL(UNKNOWN) | k141_115041 | k141_115041_19 | 21386 | 24226 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_115041 | k141_115041_20 | 24223 | 26691 | - | GH2 |
| pfam | k141_115041 | k141_115041_21 | 26700 | 27224 | - | Fasciclin |
| CAZyme | k141_115041 | k141_115041_22 | 27221 | 28645 | - | CE20 |
| NULL(UNKNOWN) | k141_115041 | k141_115041_23 | 28652 | 31483 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | k141_115041 | k141_115041_24 | 31485 | 34058 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_115041 | k141_115041_25 | 34136 | 35755 | - | 8.A.46.1.3 |
| TC | k141_115041 | k141_115041_26 | 35774 | 38839 | - | 1.B.14.6.1 |
| pfam | k141_115041 | k141_115041_27 | 38875 | 41178 | - | FAD_binding_2 | FAD_oxidored | NAD_binding_8 |
| TC | k141_115041 | k141_115041_28 | 41186 | 42823 | - | 2.A.21.3.10 |
Gene ID: k141_115041_17
Type: CAZyme
Location: 17895 - 19826 (-)
Type: CAZyme
Location: 17895 - 19826 (-)
Gene ID: k141_115041_18
Type: CAZyme
Location: 19840 - 21372 (-)
Type: CAZyme
Location: 19840 - 21372 (-)
Gene ID: k141_115041_19
Type:
Location: 21386 - 24226 (-)
Type:
Location: 21386 - 24226 (-)
Gene ID: k141_115041_20
Type: CAZyme
Location: 24223 - 26691 (-)
Type: CAZyme
Location: 24223 - 26691 (-)
Gene ID: k141_115041_21
Type: pfam
Location: 26700 - 27224 (-)
Type: pfam
Location: 26700 - 27224 (-)
Gene ID: k141_115041_22
Type: CAZyme
Location: 27221 - 28645 (-)
Type: CAZyme
Location: 27221 - 28645 (-)
Gene ID: k141_115041_23
Type:
Location: 28652 - 31483 (-)
Type:
Location: 28652 - 31483 (-)
Gene ID: k141_115041_24
Type:
Location: 31485 - 34058 (-)
Type:
Location: 31485 - 34058 (-)
Gene ID: k141_115041_25
Type: TC
Location: 34136 - 35755 (-)
Type: TC
Location: 34136 - 35755 (-)
Gene ID: k141_115041_26
Type: TC
Location: 35774 - 38839 (-)
Type: TC
Location: 35774 - 38839 (-)
Gene ID: k141_115041_27
Type: pfam
Location: 38875 - 41178 (-)
Type: pfam
Location: 38875 - 41178 (-)
Gene ID: k141_115041_28
Type: TC
Location: 41186 - 42823 (-)
Type: TC
Location: 41186 - 42823 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes provencensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.