Cluster: CGMR006612_CGC11
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 11
- Substrate:
- Genome ID: CGMR006612
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_314315 | k141_314315_4 | 4121 | 7069 | + | 1.B.14.6.1 |
| pfam | k141_314315 | k141_314315_5 | 7084 | 8847 | + | SusD_RagB |
| CAZyme | k141_314315 | k141_314315_6 | 9101 | 12277 | + | CBM67 | GH78 |
| CAZyme | k141_314315 | k141_314315_7 | 12303 | 13595 | + | GH29 |
| CAZyme | k141_314315 | k141_314315_8 | 13661 | 15613 | + | GH97 |
| STP | k141_314315 | k141_314315_9 | 15683 | 16390 | - | NUDIX |
| CAZyme | k141_314315 | k141_314315_10 | 16452 | 18299 | - | GH116 |
| pfam | k141_314315 | k141_314315_11 | 18308 | 20197 | - | Trehalase | Glyco_hydro_63 | MGH1-like_GH |
| CAZyme | k141_314315 | k141_314315_12 | 20747 | 22204 | + | GH30_2 |
| CAZyme | k141_314315 | k141_314315_13 | 22313 | 24172 | + | GH2 |
| CAZyme | k141_314315 | k141_314315_14 | 24254 | 26965 | - | CBM67 | GH78 |
| CAZyme | k141_314315 | k141_314315_15 | 26986 | 29484 | - | GH106 |
| CAZyme | k141_314315 | k141_314315_16 | 29474 | 31963 | - | GH106 |
| CAZyme | k141_314315 | k141_314315_17 | 31976 | 34189 | - | GH29 |
| pfam | k141_314315 | k141_314315_18 | 35040 | 35537 | + | Glyco_tranf_2_3 |
| CAZyme | k141_314315 | k141_314315_19 | 35939 | 37972 | - | GH127 |
Gene ID: k141_314315_4
Type: TC
Location: 4121 - 7069 (+)
Type: TC
Location: 4121 - 7069 (+)
Gene ID: k141_314315_5
Type: pfam
Location: 7084 - 8847 (+)
Type: pfam
Location: 7084 - 8847 (+)
Gene ID: k141_314315_6
Type: CAZyme
Location: 9101 - 12277 (+)
Type: CAZyme
Location: 9101 - 12277 (+)
Gene ID: k141_314315_7
Type: CAZyme
Location: 12303 - 13595 (+)
Type: CAZyme
Location: 12303 - 13595 (+)
Gene ID: k141_314315_8
Type: CAZyme
Location: 13661 - 15613 (+)
Type: CAZyme
Location: 13661 - 15613 (+)
Gene ID: k141_314315_9
Type: STP
Location: 15683 - 16390 (-)
Type: STP
Location: 15683 - 16390 (-)
Gene ID: k141_314315_10
Type: CAZyme
Location: 16452 - 18299 (-)
Type: CAZyme
Location: 16452 - 18299 (-)
Gene ID: k141_314315_11
Type: pfam
Location: 18308 - 20197 (-)
Type: pfam
Location: 18308 - 20197 (-)
Gene ID: k141_314315_12
Type: CAZyme
Location: 20747 - 22204 (+)
Type: CAZyme
Location: 20747 - 22204 (+)
Gene ID: k141_314315_13
Type: CAZyme
Location: 22313 - 24172 (+)
Type: CAZyme
Location: 22313 - 24172 (+)
Gene ID: k141_314315_14
Type: CAZyme
Location: 24254 - 26965 (-)
Type: CAZyme
Location: 24254 - 26965 (-)
Gene ID: k141_314315_15
Type: CAZyme
Location: 26986 - 29484 (-)
Type: CAZyme
Location: 26986 - 29484 (-)
Gene ID: k141_314315_16
Type: CAZyme
Location: 29474 - 31963 (-)
Type: CAZyme
Location: 29474 - 31963 (-)
Gene ID: k141_314315_17
Type: CAZyme
Location: 31976 - 34189 (-)
Type: CAZyme
Location: 31976 - 34189 (-)
Gene ID: k141_314315_18
Type: pfam
Location: 35040 - 35537 (+)
Type: pfam
Location: 35040 - 35537 (+)
Gene ID: k141_314315_19
Type: CAZyme
Location: 35939 - 37972 (-)
Type: CAZyme
Location: 35939 - 37972 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp900550375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.