Cluster: CGMR003500_CGC12
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR003500
- CGC Family ID: CGCFAM_03696
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_34260 | k141_34260_54 | 72100 | 75165 | + | 1.B.14.6.1 |
| TC | k141_34260 | k141_34260_55 | 75193 | 76758 | + | 8.A.46.1.6 |
| NULL(UNKNOWN) | k141_34260 | k141_34260_56 | 76792 | 77751 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_34260 | k141_34260_57 | 77844 | 79034 | + | CE1 |
| CAZyme | k141_34260 | k141_34260_58 | 79051 | 81393 | + | GH3 |
| CAZyme | k141_34260 | k141_34260_59 | 81505 | 83988 | + | GH3 |
| pfam | k141_34260 | k141_34260_60 | 84106 | 84456 | + | LrgA |
| pfam | k141_34260 | k141_34260_61 | 84449 | 85141 | + | LrgB |
| TC | k141_34260 | k141_34260_62 | 85225 | 86889 | + | 2.A.81.1.2 |
| STP | k141_34260 | k141_34260_63 | 86976 | 88163 | + | Aminotran_1_2 |
| pfam | k141_34260 | k141_34260_64 | 88242 | 89402 | - | ATP-grasp | CPSase_L_D2 | Dala_Dala_lig_C | PurT_C | RS_preATP-grasp-like |
| TC | k141_34260 | k141_34260_65 | 89424 | 89873 | - | 3.D.1.8.1 |
| TC | k141_34260 | k141_34260_66 | 90917 | 91651 | + | 3.A.1.140.1 |
Gene ID: k141_34260_54
Type: TC
Location: 72100 - 75165 (+)
Type: TC
Location: 72100 - 75165 (+)
Gene ID: k141_34260_55
Type: TC
Location: 75193 - 76758 (+)
Type: TC
Location: 75193 - 76758 (+)
Gene ID: k141_34260_56
Type:
Location: 76792 - 77751 (+)
Type:
Location: 76792 - 77751 (+)
Gene ID: k141_34260_57
Type: CAZyme
Location: 77844 - 79034 (+)
Type: CAZyme
Location: 77844 - 79034 (+)
Gene ID: k141_34260_58
Type: CAZyme
Location: 79051 - 81393 (+)
Type: CAZyme
Location: 79051 - 81393 (+)
Gene ID: k141_34260_59
Type: CAZyme
Location: 81505 - 83988 (+)
Type: CAZyme
Location: 81505 - 83988 (+)
Gene ID: k141_34260_60
Type: pfam
Location: 84106 - 84456 (+)
Type: pfam
Location: 84106 - 84456 (+)
Gene ID: k141_34260_61
Type: pfam
Location: 84449 - 85141 (+)
Type: pfam
Location: 84449 - 85141 (+)
Gene ID: k141_34260_62
Type: TC
Location: 85225 - 86889 (+)
Type: TC
Location: 85225 - 86889 (+)
Gene ID: k141_34260_63
Type: STP
Location: 86976 - 88163 (+)
Type: STP
Location: 86976 - 88163 (+)
Gene ID: k141_34260_64
Type: pfam
Location: 88242 - 89402 (-)
Type: pfam
Location: 88242 - 89402 (-)
Gene ID: k141_34260_65
Type: TC
Location: 89424 - 89873 (-)
Type: TC
Location: 89424 - 89873 (-)
Gene ID: k141_34260_66
Type: TC
Location: 90917 - 91651 (+)
Type: TC
Location: 90917 - 91651 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes muris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_34260_57 | vegan > omnivore | 1.53659 | 0.00821 |