Cluster: CGMR003500_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR003500
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_104484 | k141_104484_31 | 37806 | 41213 | + | 1.B.14.6.13 |
| TC | k141_104484 | k141_104484_32 | 41229 | 42818 | + | 8.A.46.2.2 |
| pfam | k141_104484 | k141_104484_33 | 42838 | 43887 | + | GH18_BT1044-like |
| pfam | k141_104484 | k141_104484_34 | 43900 | 45075 | + | BT_3987-like_N | Laminin_G_3 |
| CAZyme | k141_104484 | k141_104484_35 | 45096 | 46604 | + | GH18 |
Gene ID: k141_104484_31
Type: TC
Location: 37806 - 41213 (+)
Type: TC
Location: 37806 - 41213 (+)
Gene ID: k141_104484_32
Type: TC
Location: 41229 - 42818 (+)
Type: TC
Location: 41229 - 42818 (+)
Gene ID: k141_104484_33
Type: pfam
Location: 42838 - 43887 (+)
Type: pfam
Location: 42838 - 43887 (+)
Gene ID: k141_104484_34
Type: pfam
Location: 43900 - 45075 (+)
Type: pfam
Location: 43900 - 45075 (+)
Gene ID: k141_104484_35
Type: CAZyme
Location: 45096 - 46604 (+)
Type: CAZyme
Location: 45096 - 46604 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes muris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_104484_32 | vegan > omnivore | 1.73157 | 0.00821 |
| k141_104484_32 | vegetarian > omnivore | 1.27715 | 0.03201 |
| k141_104484_33 | vegan > omnivore | 2.20683 | 0.00821 |
| k141_104484_33 | vegetarian > omnivore | 1.46318 | 0.03201 |
| k141_104484_34 | vegetarian > omnivore | 1.82851 | 0.03201 |
| k141_104484_34 | vegan > omnivore | 2.20800 | 0.00821 |
| k141_104484_35 | vegetarian > omnivore | 1.91009 | 0.03201 |
| k141_104484_35 | vegan > omnivore | 2.20011 | 0.00821 |