Cluster: CGMR001700_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR001700
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_24687 | k141_24687_49 | 47294 | 49636 | + | 3.A.3.23.2 |
| pfam | k141_24687 | k141_24687_50 | 49733 | 50479 | + | UPF0020 | Cons_hypoth95 | MTS | Methyltransf_16 | Methyltransf_25 |
| pfam | k141_24687 | k141_24687_51 | 50469 | 50726 | + | GIY-YIG |
| CAZyme | k141_24687 | k141_24687_52 | 50761 | 52989 | - | CBM61 | GH53 |
| TC | k141_24687 | k141_24687_53 | 53102 | 54757 | - | 4.A.3.1.1 |
| TC | k141_24687 | k141_24687_54 | 54762 | 55085 | - | 4.A.3.1.3 |
| CAZyme | k141_24687 | k141_24687_55 | 55099 | 56499 | - | GH1 |
Gene ID: k141_24687_49
Type: TC
Location: 47294 - 49636 (+)
Type: TC
Location: 47294 - 49636 (+)
Gene ID: k141_24687_50
Type: pfam
Location: 49733 - 50479 (+)
Type: pfam
Location: 49733 - 50479 (+)
Gene ID: k141_24687_51
Type: pfam
Location: 50469 - 50726 (+)
Type: pfam
Location: 50469 - 50726 (+)
Gene ID: k141_24687_52
Type: CAZyme
Location: 50761 - 52989 (-)
Type: CAZyme
Location: 50761 - 52989 (-)
Gene ID: k141_24687_53
Type: TC
Location: 53102 - 54757 (-)
Type: TC
Location: 53102 - 54757 (-)
Gene ID: k141_24687_54
Type: TC
Location: 54762 - 55085 (-)
Type: TC
Location: 54762 - 55085 (-)
Gene ID: k141_24687_55
Type: CAZyme
Location: 55099 - 56499 (-)
Type: CAZyme
Location: 55099 - 56499 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus vaginalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.