Cluster: CGMR001700_CGC3
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR001700
- CGC Family ID: CGCFAM_00486
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_30046 | k141_30046_30 | 29351 | 29755 | - | 4.A.6.1.18 |
| TC | k141_30046 | k141_30046_31 | 29773 | 30600 | - | 4.A.6.1.18 |
| TC | k141_30046 | k141_30046_32 | 30587 | 31480 | - | 4.A.6.1.18 |
| TC | k141_30046 | k141_30046_33 | 31499 | 31975 | - | 4.A.6.1.18 |
| CAZyme | k141_30046 | k141_30046_34 | 31972 | 33759 | - | GH35 |
| TF | k141_30046 | k141_30046_35 | 33919 | 34635 | + | GntR |
| NULL(UNKNOWN) | k141_30046 | k141_30046_36 | 35039 | 35476 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_30046 | k141_30046_37 | 35575 | 36288 | - | 1.A.8.2.6 |
Gene ID: k141_30046_30
Type: TC
Location: 29351 - 29755 (-)
Type: TC
Location: 29351 - 29755 (-)
Gene ID: k141_30046_31
Type: TC
Location: 29773 - 30600 (-)
Type: TC
Location: 29773 - 30600 (-)
Gene ID: k141_30046_32
Type: TC
Location: 30587 - 31480 (-)
Type: TC
Location: 30587 - 31480 (-)
Gene ID: k141_30046_33
Type: TC
Location: 31499 - 31975 (-)
Type: TC
Location: 31499 - 31975 (-)
Gene ID: k141_30046_34
Type: CAZyme
Location: 31972 - 33759 (-)
Type: CAZyme
Location: 31972 - 33759 (-)
Gene ID: k141_30046_35
Type: TF
Location: 33919 - 34635 (+)
Type: TF
Location: 33919 - 34635 (+)
Gene ID: k141_30046_36
Type:
Location: 35039 - 35476 (-)
Type:
Location: 35039 - 35476 (-)
Gene ID: k141_30046_37
Type: TC
Location: 35575 - 36288 (-)
Type: TC
Location: 35575 - 36288 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus vaginalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.