Cluster: CGMR001000_CGC89
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 12
- Substrate:
- Genome ID: CGMR001000
- CGC Family ID: CGCFAM_01916
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_20894 | k141_20894_7 | 7226 | 8266 | + | GH43_34 |
| CAZyme | k141_20894 | k141_20894_8 | 9046 | 11346 | + | GH92 |
| CAZyme | k141_20894 | k141_20894_9 | 11355 | 13577 | + | GH92 |
| TC | k141_20894 | k141_20894_10 | 13658 | 16735 | + | 1.B.14.6.1 |
| pfam | k141_20894 | k141_20894_11 | 16747 | 18615 | + | SusD_RagB | SusD-like_3 |
| pfam | k141_20894 | k141_20894_12 | 18638 | 19366 | + | DUF3823 | DUF3823_C |
| CAZyme | k141_20894 | k141_20894_13 | 19378 | 21942 | + | GH3 |
| CAZyme | k141_20894 | k141_20894_14 | 21951 | 24695 | + | CBM6 |
| pfam | k141_20894 | k141_20894_15 | 24729 | 26408 | + | CBM_6 | CBM_6 | CBM_6 |
| CAZyme | k141_20894 | k141_20894_16 | 26507 | 29098 | + | GH3 |
| pfam | k141_20894 | k141_20894_17 | 29167 | 31053 | + | GxGYxYP_C |
| CAZyme | k141_20894 | k141_20894_18 | 31273 | 33225 | + | CE12 |
| CAZyme | k141_20894 | k141_20894_19 | 33258 | 36974 | + | CE8 |
| TF | k141_20894 | k141_20894_20 | 37301 | 41587 | + | HTH_AraC |
| TC | k141_20894 | k141_20894_21 | 41647 | 42192 | - | 9.B.104.3.2 |
| CAZyme | k141_20894 | k141_20894_22 | 42456 | 44396 | + | GH133 |
| CAZyme | k141_20894 | k141_20894_23 | 44411 | 45679 | + | GT4 |
| CAZyme | k141_20894 | k141_20894_24 | 45695 | 47095 | + | GH57 |
| pfam | k141_20894 | k141_20894_25 | 47533 | 49122 | - | DUF4270 |
| CAZyme | k141_20894 | k141_20894_26 | 49147 | 50130 | - | GT5 |
Gene ID: k141_20894_7
Type: CAZyme
Location: 7226 - 8266 (+)
Type: CAZyme
Location: 7226 - 8266 (+)
Gene ID: k141_20894_8
Type: CAZyme
Location: 9046 - 11346 (+)
Type: CAZyme
Location: 9046 - 11346 (+)
Gene ID: k141_20894_9
Type: CAZyme
Location: 11355 - 13577 (+)
Type: CAZyme
Location: 11355 - 13577 (+)
Gene ID: k141_20894_10
Type: TC
Location: 13658 - 16735 (+)
Type: TC
Location: 13658 - 16735 (+)
Gene ID: k141_20894_11
Type: pfam
Location: 16747 - 18615 (+)
Type: pfam
Location: 16747 - 18615 (+)
Gene ID: k141_20894_12
Type: pfam
Location: 18638 - 19366 (+)
Type: pfam
Location: 18638 - 19366 (+)
Gene ID: k141_20894_13
Type: CAZyme
Location: 19378 - 21942 (+)
Type: CAZyme
Location: 19378 - 21942 (+)
Gene ID: k141_20894_14
Type: CAZyme
Location: 21951 - 24695 (+)
Type: CAZyme
Location: 21951 - 24695 (+)
Gene ID: k141_20894_15
Type: pfam
Location: 24729 - 26408 (+)
Type: pfam
Location: 24729 - 26408 (+)
Gene ID: k141_20894_16
Type: CAZyme
Location: 26507 - 29098 (+)
Type: CAZyme
Location: 26507 - 29098 (+)
Gene ID: k141_20894_17
Type: pfam
Location: 29167 - 31053 (+)
Type: pfam
Location: 29167 - 31053 (+)
Gene ID: k141_20894_18
Type: CAZyme
Location: 31273 - 33225 (+)
Type: CAZyme
Location: 31273 - 33225 (+)
Gene ID: k141_20894_19
Type: CAZyme
Location: 33258 - 36974 (+)
Type: CAZyme
Location: 33258 - 36974 (+)
Gene ID: k141_20894_20
Type: TF
Location: 37301 - 41587 (+)
Type: TF
Location: 37301 - 41587 (+)
Gene ID: k141_20894_21
Type: TC
Location: 41647 - 42192 (-)
Type: TC
Location: 41647 - 42192 (-)
Gene ID: k141_20894_22
Type: CAZyme
Location: 42456 - 44396 (+)
Type: CAZyme
Location: 42456 - 44396 (+)
Gene ID: k141_20894_23
Type: CAZyme
Location: 44411 - 45679 (+)
Type: CAZyme
Location: 44411 - 45679 (+)
Gene ID: k141_20894_24
Type: CAZyme
Location: 45695 - 47095 (+)
Type: CAZyme
Location: 45695 - 47095 (+)
Gene ID: k141_20894_25
Type: pfam
Location: 47533 - 49122 (-)
Type: pfam
Location: 47533 - 49122 (-)
Gene ID: k141_20894_26
Type: CAZyme
Location: 49147 - 50130 (-)
Type: CAZyme
Location: 49147 - 50130 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides nordii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.