Cluster: CGMR001000_CGC73
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR001000
- CGC Family ID: CGCFAM_02948
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_18991 | k141_18991_3 | 1802 | 3037 | - | GH88 |
| pfam | k141_18991 | k141_18991_4 | 3154 | 4260 | - | Alginate_lyase |
| NULL(UNKNOWN) | k141_18991 | k141_18991_5 | 4625 | 5563 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_18991 | k141_18991_6 | 5560 | 7947 | + | PL30 |
| CAZyme | k141_18991 | k141_18991_7 | 8103 | 9920 | + | GH35 |
| TC | k141_18991 | k141_18991_8 | 10141 | 13227 | + | 1.B.14.6.1 |
| pfam | k141_18991 | k141_18991_9 | 13234 | 14943 | + | SusD_RagB | SusD-like_3 |
| TC | k141_18991 | k141_18991_10 | 14974 | 17961 | + | 1.B.14.6.1 |
Gene ID: k141_18991_3
Type: CAZyme
Location: 1802 - 3037 (-)
Type: CAZyme
Location: 1802 - 3037 (-)
Gene ID: k141_18991_4
Type: pfam
Location: 3154 - 4260 (-)
Type: pfam
Location: 3154 - 4260 (-)
Gene ID: k141_18991_5
Type:
Location: 4625 - 5563 (+)
Type:
Location: 4625 - 5563 (+)
Gene ID: k141_18991_6
Type: CAZyme
Location: 5560 - 7947 (+)
Type: CAZyme
Location: 5560 - 7947 (+)
Gene ID: k141_18991_7
Type: CAZyme
Location: 8103 - 9920 (+)
Type: CAZyme
Location: 8103 - 9920 (+)
Gene ID: k141_18991_8
Type: TC
Location: 10141 - 13227 (+)
Type: TC
Location: 10141 - 13227 (+)
Gene ID: k141_18991_9
Type: pfam
Location: 13234 - 14943 (+)
Type: pfam
Location: 13234 - 14943 (+)
Gene ID: k141_18991_10
Type: TC
Location: 14974 - 17961 (+)
Type: TC
Location: 14974 - 17961 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides nordii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.