Cluster: CGMR001000_CGC61
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR001000
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_293 | k141_293_9 | 7516 | 8871 | + | 9.B.145.1.2 |
| peptidase | k141_293 | k141_293_10 | 8903 | 11032 | + | S46.UPW |
| pfam | k141_293 | k141_293_11 | 11054 | 11917 | - | EamA | EamA |
| CAZyme | k141_293 | k141_293_12 | 12122 | 14152 | + | GH127 |
| pfam | k141_293 | k141_293_13 | 14178 | 15713 | + | Glyco_hydro_42 |
| TF | k141_293 | k141_293_14 | 15841 | 20028 | - | HTH_AraC |
| CAZyme | k141_293 | k141_293_15 | 20289 | 22061 | + | GH146 |
| CAZyme | k141_293 | k141_293_16 | 22073 | 24376 | + | CBM67 | GH78 |
| TC | k141_293 | k141_293_17 | 25164 | 28337 | + | 1.B.14.6.1 |
| pfam | k141_293 | k141_293_18 | 28360 | 30057 | + | SusD_RagB | SusD-like_3 |
| pfam | k141_293 | k141_293_19 | 30141 | 30959 | + | DUF6383 |
| CAZyme | k141_293 | k141_293_20 | 31035 | 33581 | + | GH110 |
| NULL(UNKNOWN) | k141_293 | k141_293_21 | 33578 | 36736 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_293 | k141_293_22 | 36882 | 38816 | - | 3.A.18.1.1 |
| TC | k141_293 | k141_293_23 | 38940 | 40373 | + | 2.A.50.2.1 |
Gene ID: k141_293_9
Type: TC
Location: 7516 - 8871 (+)
Type: TC
Location: 7516 - 8871 (+)
Gene ID: k141_293_10
Type: peptidase
Location: 8903 - 11032 (+)
Type: peptidase
Location: 8903 - 11032 (+)
Gene ID: k141_293_11
Type: pfam
Location: 11054 - 11917 (-)
Type: pfam
Location: 11054 - 11917 (-)
Gene ID: k141_293_12
Type: CAZyme
Location: 12122 - 14152 (+)
Type: CAZyme
Location: 12122 - 14152 (+)
Gene ID: k141_293_13
Type: pfam
Location: 14178 - 15713 (+)
Type: pfam
Location: 14178 - 15713 (+)
Gene ID: k141_293_14
Type: TF
Location: 15841 - 20028 (-)
Type: TF
Location: 15841 - 20028 (-)
Gene ID: k141_293_15
Type: CAZyme
Location: 20289 - 22061 (+)
Type: CAZyme
Location: 20289 - 22061 (+)
Gene ID: k141_293_16
Type: CAZyme
Location: 22073 - 24376 (+)
Type: CAZyme
Location: 22073 - 24376 (+)
Gene ID: k141_293_17
Type: TC
Location: 25164 - 28337 (+)
Type: TC
Location: 25164 - 28337 (+)
Gene ID: k141_293_18
Type: pfam
Location: 28360 - 30057 (+)
Type: pfam
Location: 28360 - 30057 (+)
Gene ID: k141_293_19
Type: pfam
Location: 30141 - 30959 (+)
Type: pfam
Location: 30141 - 30959 (+)
Gene ID: k141_293_20
Type: CAZyme
Location: 31035 - 33581 (+)
Type: CAZyme
Location: 31035 - 33581 (+)
Gene ID: k141_293_21
Type:
Location: 33578 - 36736 (+)
Type:
Location: 33578 - 36736 (+)
Gene ID: k141_293_22
Type: TC
Location: 36882 - 38816 (-)
Type: TC
Location: 36882 - 38816 (-)
Gene ID: k141_293_23
Type: TC
Location: 38940 - 40373 (+)
Type: TC
Location: 38940 - 40373 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides nordii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.