Cluster: CGMR001000_CGC28
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 10
- Substrate: pectin
- Genome ID: CGMR001000
- CGC Family ID: CGCFAM_00298
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_2004 | k141_2004_10 | 8745 | 11273 | + | CE20 | GH105 |
| CAZyme | k141_2004 | k141_2004_11 | 11385 | 14114 | + | GH106 |
| CAZyme | k141_2004 | k141_2004_12 | 14107 | 15939 | + | PL11 |
| CAZyme | k141_2004 | k141_2004_13 | 16245 | 19286 | + | CBM89 | GH10 |
| CAZyme | k141_2004 | k141_2004_14 | 19332 | 20861 | + | GH28 |
| CAZyme | k141_2004 | k141_2004_15 | 20949 | 22382 | + | GH28 |
| pfam | k141_2004 | k141_2004_16 | 22400 | 23857 | + | FGGY_N | FGGY_C |
| pfam | k141_2004 | k141_2004_17 | 23854 | 25110 | + | RhaA |
| TC | k141_2004 | k141_2004_18 | 25225 | 26256 | + | 2.A.7.6.1 |
| pfam | k141_2004 | k141_2004_19 | 26394 | 27203 | + | Aldolase_II |
| CAZyme | k141_2004 | k141_2004_20 | 27224 | 28522 | + | GH105 |
| CAZyme | k141_2004 | k141_2004_21 | 28763 | 31765 | + | PL1_2 |
| CAZyme | k141_2004 | k141_2004_22 | 32439 | 34433 | + | CBM89 |
| CAZyme | k141_2004 | k141_2004_23 | 34604 | 37519 | + | PL1_2 |
| pfam | k141_2004 | k141_2004_24 | 37531 | 39783 | + | Fasciclin |
| TC | k141_2004 | k141_2004_25 | 39800 | 43066 | + | 1.B.14.6.1 |
Gene ID: k141_2004_10
Type: CAZyme
Location: 8745 - 11273 (+)
Type: CAZyme
Location: 8745 - 11273 (+)
Gene ID: k141_2004_11
Type: CAZyme
Location: 11385 - 14114 (+)
Type: CAZyme
Location: 11385 - 14114 (+)
Gene ID: k141_2004_12
Type: CAZyme
Location: 14107 - 15939 (+)
Type: CAZyme
Location: 14107 - 15939 (+)
Gene ID: k141_2004_13
Type: CAZyme
Location: 16245 - 19286 (+)
Type: CAZyme
Location: 16245 - 19286 (+)
Gene ID: k141_2004_14
Type: CAZyme
Location: 19332 - 20861 (+)
Type: CAZyme
Location: 19332 - 20861 (+)
Gene ID: k141_2004_15
Type: CAZyme
Location: 20949 - 22382 (+)
Type: CAZyme
Location: 20949 - 22382 (+)
Gene ID: k141_2004_16
Type: pfam
Location: 22400 - 23857 (+)
Type: pfam
Location: 22400 - 23857 (+)
Gene ID: k141_2004_17
Type: pfam
Location: 23854 - 25110 (+)
Type: pfam
Location: 23854 - 25110 (+)
Gene ID: k141_2004_18
Type: TC
Location: 25225 - 26256 (+)
Type: TC
Location: 25225 - 26256 (+)
Gene ID: k141_2004_19
Type: pfam
Location: 26394 - 27203 (+)
Type: pfam
Location: 26394 - 27203 (+)
Gene ID: k141_2004_20
Type: CAZyme
Location: 27224 - 28522 (+)
Type: CAZyme
Location: 27224 - 28522 (+)
Gene ID: k141_2004_21
Type: CAZyme
Location: 28763 - 31765 (+)
Type: CAZyme
Location: 28763 - 31765 (+)
Gene ID: k141_2004_22
Type: CAZyme
Location: 32439 - 34433 (+)
Type: CAZyme
Location: 32439 - 34433 (+)
Gene ID: k141_2004_23
Type: CAZyme
Location: 34604 - 37519 (+)
Type: CAZyme
Location: 34604 - 37519 (+)
Gene ID: k141_2004_24
Type: pfam
Location: 37531 - 39783 (+)
Type: pfam
Location: 37531 - 39783 (+)
Gene ID: k141_2004_25
Type: TC
Location: 39800 - 43066 (+)
Type: TC
Location: 39800 - 43066 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides nordii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.