Cluster: CGMR001000_CGC26
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 9
- Substrate:
- Genome ID: CGMR001000
- CGC Family ID: CGCFAM_01254
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_34020 | k141_34020_3 | 2290 | 4881 | - | GH3 |
| CAZyme | k141_34020 | k141_34020_4 | 5113 | 7680 | - | GH3 |
| CAZyme | k141_34020 | k141_34020_5 | 7704 | 9098 | - | GH30_2 |
| CAZyme | k141_34020 | k141_34020_6 | 9108 | 11387 | - | GH92 |
| pfam | k141_34020 | k141_34020_7 | 11535 | 12500 | - | BT_3987-like_N | BT_3044-like_C |
| pfam | k141_34020 | k141_34020_8 | 12531 | 14537 | - | SusD_RagB | SusD-like_3 |
| TC | k141_34020 | k141_34020_9 | 14569 | 17688 | - | 1.B.14.6.1 |
| pfam | k141_34020 | k141_34020_10 | 17715 | 19022 | - | NHL | TIG |
| CAZyme | k141_34020 | k141_34020_11 | 19051 | 21159 | - | GH36 |
| CAZyme | k141_34020 | k141_34020_12 | 21497 | 25828 | - | GH2 |
| NULL(UNKNOWN) | k141_34020 | k141_34020_13 | 25879 | 27660 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | k141_34020 | k141_34020_14 | 28169 | 32161 | + | HTH_AraC |
| CAZyme | k141_34020 | k141_34020_15 | 32158 | 33165 | + | GH43_24 |
| pfam | k141_34020 | k141_34020_16 | 33199 | 35166 | + | FG-GAP_3 | FG-GAP_3 | FG-GAP_3 |
| CAZyme | k141_34020 | k141_34020_17 | 35188 | 38115 | + | GH2 |
| CAZyme | k141_34020 | k141_34020_18 | 38128 | 39120 | + | GH43_2 |
Gene ID: k141_34020_3
Type: CAZyme
Location: 2290 - 4881 (-)
Type: CAZyme
Location: 2290 - 4881 (-)
Gene ID: k141_34020_4
Type: CAZyme
Location: 5113 - 7680 (-)
Type: CAZyme
Location: 5113 - 7680 (-)
Gene ID: k141_34020_5
Type: CAZyme
Location: 7704 - 9098 (-)
Type: CAZyme
Location: 7704 - 9098 (-)
Gene ID: k141_34020_6
Type: CAZyme
Location: 9108 - 11387 (-)
Type: CAZyme
Location: 9108 - 11387 (-)
Gene ID: k141_34020_7
Type: pfam
Location: 11535 - 12500 (-)
Type: pfam
Location: 11535 - 12500 (-)
Gene ID: k141_34020_8
Type: pfam
Location: 12531 - 14537 (-)
Type: pfam
Location: 12531 - 14537 (-)
Gene ID: k141_34020_9
Type: TC
Location: 14569 - 17688 (-)
Type: TC
Location: 14569 - 17688 (-)
Gene ID: k141_34020_10
Type: pfam
Location: 17715 - 19022 (-)
Type: pfam
Location: 17715 - 19022 (-)
Gene ID: k141_34020_11
Type: CAZyme
Location: 19051 - 21159 (-)
Type: CAZyme
Location: 19051 - 21159 (-)
Gene ID: k141_34020_12
Type: CAZyme
Location: 21497 - 25828 (-)
Type: CAZyme
Location: 21497 - 25828 (-)
Gene ID: k141_34020_13
Type:
Location: 25879 - 27660 (-)
Type:
Location: 25879 - 27660 (-)
Gene ID: k141_34020_14
Type: TF
Location: 28169 - 32161 (+)
Type: TF
Location: 28169 - 32161 (+)
Gene ID: k141_34020_15
Type: CAZyme
Location: 32158 - 33165 (+)
Type: CAZyme
Location: 32158 - 33165 (+)
Gene ID: k141_34020_16
Type: pfam
Location: 33199 - 35166 (+)
Type: pfam
Location: 33199 - 35166 (+)
Gene ID: k141_34020_17
Type: CAZyme
Location: 35188 - 38115 (+)
Type: CAZyme
Location: 35188 - 38115 (+)
Gene ID: k141_34020_18
Type: CAZyme
Location: 38128 - 39120 (+)
Type: CAZyme
Location: 38128 - 39120 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides nordii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.