Cluster: C89.bin_3_CGC72
🧬 Cluster Details
- Gene Count: 28
- CAZyme Count: 7
- Substrate:
- Genome ID: C89.bin_3
- CGC Family ID: CGCFAM_06656
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C89_contig_31 | C89_contig_31_881 | 1145203 | 1146990 | + | GH110 |
| pfam | C89_contig_31 | C89_contig_31_882 | 1147022 | 1148176 | + | Flavin_Reduct | DUF4468 |
| pfam | C89_contig_31 | C89_contig_31_883 | 1148257 | 1149015 | + | PseudoU_synth_1 | PseudoU_synth_1 |
| TC | C89_contig_31 | C89_contig_31_884 | 1149047 | 1149946 | + | 2.A.7.3.57 |
| pfam | C89_contig_31 | C89_contig_31_885 | 1149974 | 1150627 | + | DUF3256 |
| pfam | C89_contig_31 | C89_contig_31_886 | 1150608 | 1151693 | - | APH |
| CAZyme | C89_contig_31 | C89_contig_31_887 | 1151715 | 1155050 | - | GH2 |
| TC | C89_contig_31 | C89_contig_31_888 | 1155076 | 1155888 | - | 2.A.115.1.1 |
| CAZyme | C89_contig_31 | C89_contig_31_889 | 1156078 | 1157472 | - | GH109 |
| CAZyme | C89_contig_31 | C89_contig_31_890 | 1158578 | 1160845 | - | GH95 |
| CAZyme | C89_contig_31 | C89_contig_31_891 | 1160969 | 1163740 | - | GH2 |
| pfam | C89_contig_31 | C89_contig_31_892 | 1163737 | 1167039 | - | TPR_6 | DUF5107 |
| TC | C89_contig_31 | C89_contig_31_893 | 1167053 | 1168432 | - | 2.A.1.1.55 |
| TF | C89_contig_31 | C89_contig_31_894 | 1168555 | 1169466 | + | HTH_AraC | HTH_AraC |
| CAZyme | C89_contig_31 | C89_contig_31_895 | 1169621 | 1172272 | - | GH3 |
| pfam | C89_contig_31 | C89_contig_31_896 | 1172379 | 1173815 | - | PD40 | PD40 | PD40 |
| pfam | C89_contig_31 | C89_contig_31_897 | 1173827 | 1175356 | - | DUF6057 | DUF6057 |
| TC | C89_contig_31 | C89_contig_31_898 | 1175374 | 1177011 | - | 8.A.46.1.4 |
| TC | C89_contig_31 | C89_contig_31_899 | 1177033 | 1180350 | - | 1.B.14.6.1 |
| STP | C89_contig_31 | C89_contig_31_900 | 1180603 | 1181589 | - | FecR |
| TF | C89_contig_31 | C89_contig_31_901 | 1181715 | 1182290 | - | GerE |
| TC | C89_contig_31 | C89_contig_31_902 | 1183179 | 1186490 | + | 1.B.14.6.1 |
| pfam | C89_contig_31 | C89_contig_31_903 | 1186504 | 1188270 | + | SusD_RagB | SusD-like_3 |
| TC | C89_contig_31 | C89_contig_31_904 | 1188560 | 1191970 | + | 1.B.14.6.1 |
| pfam | C89_contig_31 | C89_contig_31_905 | 1191999 | 1193759 | + | SusD_RagB | SusD-like_3 |
| TC | C89_contig_31 | C89_contig_31_906 | 1194070 | 1197453 | + | 1.B.14.6.1 |
| TC | C89_contig_31 | C89_contig_31_907 | 1197472 | 1199256 | + | 8.A.46.1.6 |
| CAZyme | C89_contig_31 | C89_contig_31_908 | 1199348 | 1200598 | - | GH109 |
Gene ID: C89_contig_31_881
Type: CAZyme
Location: 1145203 - 1146990 (+)
Type: CAZyme
Location: 1145203 - 1146990 (+)
Gene ID: C89_contig_31_882
Type: pfam
Location: 1147022 - 1148176 (+)
Type: pfam
Location: 1147022 - 1148176 (+)
Gene ID: C89_contig_31_883
Type: pfam
Location: 1148257 - 1149015 (+)
Type: pfam
Location: 1148257 - 1149015 (+)
Gene ID: C89_contig_31_884
Type: TC
Location: 1149047 - 1149946 (+)
Type: TC
Location: 1149047 - 1149946 (+)
Gene ID: C89_contig_31_885
Type: pfam
Location: 1149974 - 1150627 (+)
Type: pfam
Location: 1149974 - 1150627 (+)
Gene ID: C89_contig_31_886
Type: pfam
Location: 1150608 - 1151693 (-)
Type: pfam
Location: 1150608 - 1151693 (-)
Gene ID: C89_contig_31_887
Type: CAZyme
Location: 1151715 - 1155050 (-)
Type: CAZyme
Location: 1151715 - 1155050 (-)
Gene ID: C89_contig_31_888
Type: TC
Location: 1155076 - 1155888 (-)
Type: TC
Location: 1155076 - 1155888 (-)
Gene ID: C89_contig_31_889
Type: CAZyme
Location: 1156078 - 1157472 (-)
Type: CAZyme
Location: 1156078 - 1157472 (-)
Gene ID: C89_contig_31_890
Type: CAZyme
Location: 1158578 - 1160845 (-)
Type: CAZyme
Location: 1158578 - 1160845 (-)
Gene ID: C89_contig_31_891
Type: CAZyme
Location: 1160969 - 1163740 (-)
Type: CAZyme
Location: 1160969 - 1163740 (-)
Gene ID: C89_contig_31_892
Type: pfam
Location: 1163737 - 1167039 (-)
Type: pfam
Location: 1163737 - 1167039 (-)
Gene ID: C89_contig_31_893
Type: TC
Location: 1167053 - 1168432 (-)
Type: TC
Location: 1167053 - 1168432 (-)
Gene ID: C89_contig_31_894
Type: TF
Location: 1168555 - 1169466 (+)
Type: TF
Location: 1168555 - 1169466 (+)
Gene ID: C89_contig_31_895
Type: CAZyme
Location: 1169621 - 1172272 (-)
Type: CAZyme
Location: 1169621 - 1172272 (-)
Gene ID: C89_contig_31_896
Type: pfam
Location: 1172379 - 1173815 (-)
Type: pfam
Location: 1172379 - 1173815 (-)
Gene ID: C89_contig_31_897
Type: pfam
Location: 1173827 - 1175356 (-)
Type: pfam
Location: 1173827 - 1175356 (-)
Gene ID: C89_contig_31_898
Type: TC
Location: 1175374 - 1177011 (-)
Type: TC
Location: 1175374 - 1177011 (-)
Gene ID: C89_contig_31_899
Type: TC
Location: 1177033 - 1180350 (-)
Type: TC
Location: 1177033 - 1180350 (-)
Gene ID: C89_contig_31_900
Type: STP
Location: 1180603 - 1181589 (-)
Type: STP
Location: 1180603 - 1181589 (-)
Gene ID: C89_contig_31_901
Type: TF
Location: 1181715 - 1182290 (-)
Type: TF
Location: 1181715 - 1182290 (-)
Gene ID: C89_contig_31_902
Type: TC
Location: 1183179 - 1186490 (+)
Type: TC
Location: 1183179 - 1186490 (+)
Gene ID: C89_contig_31_903
Type: pfam
Location: 1186504 - 1188270 (+)
Type: pfam
Location: 1186504 - 1188270 (+)
Gene ID: C89_contig_31_904
Type: TC
Location: 1188560 - 1191970 (+)
Type: TC
Location: 1188560 - 1191970 (+)
Gene ID: C89_contig_31_905
Type: pfam
Location: 1191999 - 1193759 (+)
Type: pfam
Location: 1191999 - 1193759 (+)
Gene ID: C89_contig_31_906
Type: TC
Location: 1194070 - 1197453 (+)
Type: TC
Location: 1194070 - 1197453 (+)
Gene ID: C89_contig_31_907
Type: TC
Location: 1197472 - 1199256 (+)
Type: TC
Location: 1197472 - 1199256 (+)
Gene ID: C89_contig_31_908
Type: CAZyme
Location: 1199348 - 1200598 (-)
Type: CAZyme
Location: 1199348 - 1200598 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides fragilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.