Cluster: C89.bin_3_CGC71
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate: beta-mannan
- Genome ID: C89.bin_3
- CGC Family ID: CGCFAM_04150
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C89_contig_31 | C89_contig_31_840 | 1089021 | 1091096 | - | GH36 |
| CAZyme | C89_contig_31 | C89_contig_31_841 | 1091106 | 1092488 | - | GH29 |
| sulfatase | C89_contig_31 | C89_contig_31_842 | 1092491 | 1093942 | - | S1_27 |
| pfam | C89_contig_31 | C89_contig_31_843 | 1094061 | 1096043 | - | SusD_RagB | SusD-like_3 |
| TC | C89_contig_31 | C89_contig_31_844 | 1096056 | 1099217 | - | 1.B.14.6.1 |
| TF | C89_contig_31 | C89_contig_31_845 | 1099427 | 1103512 | + | 0035607 |
| TC | C89_contig_31 | C89_contig_31_846 | 1103679 | 1105124 | - | 2.A.1.14.25 |
| CAZyme | C89_contig_31 | C89_contig_31_847 | 1105568 | 1106917 | + | GH29 |
| pfam | C89_contig_31 | C89_contig_31_848 | 1106936 | 1108183 | + | N-glycanase_N | N-glycanase_C |
| pfam | C89_contig_31 | C89_contig_31_849 | 1108503 | 1111964 | - | DEAD | ResIII | AAA_11 | AAA_11 | AAA_12 | AAA_19 | AAA_30 |
| TC | C89_contig_31 | C89_contig_31_850 | 1112060 | 1113100 | - | 9.B.97.3.1 |
| TC | C89_contig_31 | C89_contig_31_851 | 1113308 | 1114102 | - | 2.A.64.2.1 |
Gene ID: C89_contig_31_840
Type: CAZyme
Location: 1089021 - 1091096 (-)
Type: CAZyme
Location: 1089021 - 1091096 (-)
Gene ID: C89_contig_31_841
Type: CAZyme
Location: 1091106 - 1092488 (-)
Type: CAZyme
Location: 1091106 - 1092488 (-)
Gene ID: C89_contig_31_842
Type: sulfatase
Location: 1092491 - 1093942 (-)
Type: sulfatase
Location: 1092491 - 1093942 (-)
Gene ID: C89_contig_31_843
Type: pfam
Location: 1094061 - 1096043 (-)
Type: pfam
Location: 1094061 - 1096043 (-)
Gene ID: C89_contig_31_844
Type: TC
Location: 1096056 - 1099217 (-)
Type: TC
Location: 1096056 - 1099217 (-)
Gene ID: C89_contig_31_845
Type: TF
Location: 1099427 - 1103512 (+)
Type: TF
Location: 1099427 - 1103512 (+)
Gene ID: C89_contig_31_846
Type: TC
Location: 1103679 - 1105124 (-)
Type: TC
Location: 1103679 - 1105124 (-)
Gene ID: C89_contig_31_847
Type: CAZyme
Location: 1105568 - 1106917 (+)
Type: CAZyme
Location: 1105568 - 1106917 (+)
Gene ID: C89_contig_31_848
Type: pfam
Location: 1106936 - 1108183 (+)
Type: pfam
Location: 1106936 - 1108183 (+)
Gene ID: C89_contig_31_849
Type: pfam
Location: 1108503 - 1111964 (-)
Type: pfam
Location: 1108503 - 1111964 (-)
Gene ID: C89_contig_31_850
Type: TC
Location: 1112060 - 1113100 (-)
Type: TC
Location: 1112060 - 1113100 (-)
Gene ID: C89_contig_31_851
Type: TC
Location: 1113308 - 1114102 (-)
Type: TC
Location: 1113308 - 1114102 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides fragilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.