Cluster: C89.bin_3_CGC65
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: C89.bin_3
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C89_contig_31 | C89_contig_31_723 | 935007 | 936740 | - | 8.A.46.2.1 |
| TC | C89_contig_31 | C89_contig_31_724 | 936763 | 940179 | - | 1.B.14.6.2 |
| CAZyme | C89_contig_31 | C89_contig_31_725 | 940424 | 942694 | - | GH92 |
| CAZyme | C89_contig_31 | C89_contig_31_726 | 942797 | 945064 | - | GH92 |
| STP | C89_contig_31 | C89_contig_31_727 | 945094 | 946092 | - | FecR |
| TF | C89_contig_31 | C89_contig_31_728 | 946145 | 946699 | - | GerE |
| CAZyme | C89_contig_31 | C89_contig_31_729 | 946738 | 948954 | - | GH92 |
| TC | C89_contig_31 | C89_contig_31_730 | 949454 | 950647 | - | 2.A.1.2.97 |
| TF | C89_contig_31 | C89_contig_31_731 | 950797 | 951651 | + | HTH_AraC |
| pfam | C89_contig_31 | C89_contig_31_732 | 951898 | 954516 | - | tRNA-synt_2c | DHHA1 | tRNA_SAD |
| TC | C89_contig_31 | C89_contig_31_733 | 954620 | 955588 | + | 1.A.34.1.3 |
| TF | C89_contig_31 | C89_contig_31_734 | 955603 | 955968 | + | MerR |
| STP | C89_contig_31 | C89_contig_31_735 | 956023 | 958266 | - | HD |
| CAZyme | C89_contig_31 | C89_contig_31_736 | 958335 | 959633 | - | GH23 |
Gene ID: C89_contig_31_723
Type: TC
Location: 935007 - 936740 (-)
Type: TC
Location: 935007 - 936740 (-)
Gene ID: C89_contig_31_724
Type: TC
Location: 936763 - 940179 (-)
Type: TC
Location: 936763 - 940179 (-)
Gene ID: C89_contig_31_725
Type: CAZyme
Location: 940424 - 942694 (-)
Type: CAZyme
Location: 940424 - 942694 (-)
Gene ID: C89_contig_31_726
Type: CAZyme
Location: 942797 - 945064 (-)
Type: CAZyme
Location: 942797 - 945064 (-)
Gene ID: C89_contig_31_727
Type: STP
Location: 945094 - 946092 (-)
Type: STP
Location: 945094 - 946092 (-)
Gene ID: C89_contig_31_728
Type: TF
Location: 946145 - 946699 (-)
Type: TF
Location: 946145 - 946699 (-)
Gene ID: C89_contig_31_729
Type: CAZyme
Location: 946738 - 948954 (-)
Type: CAZyme
Location: 946738 - 948954 (-)
Gene ID: C89_contig_31_730
Type: TC
Location: 949454 - 950647 (-)
Type: TC
Location: 949454 - 950647 (-)
Gene ID: C89_contig_31_731
Type: TF
Location: 950797 - 951651 (+)
Type: TF
Location: 950797 - 951651 (+)
Gene ID: C89_contig_31_732
Type: pfam
Location: 951898 - 954516 (-)
Type: pfam
Location: 951898 - 954516 (-)
Gene ID: C89_contig_31_733
Type: TC
Location: 954620 - 955588 (+)
Type: TC
Location: 954620 - 955588 (+)
Gene ID: C89_contig_31_734
Type: TF
Location: 955603 - 955968 (+)
Type: TF
Location: 955603 - 955968 (+)
Gene ID: C89_contig_31_735
Type: STP
Location: 956023 - 958266 (-)
Type: STP
Location: 956023 - 958266 (-)
Gene ID: C89_contig_31_736
Type: CAZyme
Location: 958335 - 959633 (-)
Type: CAZyme
Location: 958335 - 959633 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides fragilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C89_contig_31_728 | vegan > omnivore | 1.14473 | 0.00500 |