Cluster: C89.bin_3_CGC61
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 7
- Substrate:
- Genome ID: C89.bin_3
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C89_contig_31 | C89_contig_31_598 | 762265 | 762837 | - | 4.B.1.1.4 |
| TC | C89_contig_31 | C89_contig_31_599 | 762841 | 765060 | - | 1.B.14.14.1 |
| TC | C89_contig_31 | C89_contig_31_600 | 765273 | 766178 | + | 1.A.23.2.1 |
| NULL(UNKNOWN) | C89_contig_31 | C89_contig_31_601 | 766235 | 766459 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C89_contig_31 | C89_contig_31_602 | 766957 | 769278 | + | GH35 |
| CAZyme | C89_contig_31 | C89_contig_31_603 | 769601 | 771796 | + | GH92 |
| CAZyme | C89_contig_31 | C89_contig_31_604 | 771841 | 774333 | + | GH35 |
| CAZyme | C89_contig_31 | C89_contig_31_605 | 774488 | 776074 | + | CBM91 | GH43_10 |
| TC | C89_contig_31 | C89_contig_31_606 | 776438 | 779515 | + | 1.B.14.6.1 |
| TC | C89_contig_31 | C89_contig_31_607 | 779546 | 781213 | + | 8.A.46.1.3 |
| pfam | C89_contig_31 | C89_contig_31_608 | 781348 | 783129 | + | DUF6057 |
| pfam | C89_contig_31 | C89_contig_31_609 | 783142 | 784590 | + | PD40 | PD40 |
| CAZyme | C89_contig_31 | C89_contig_31_610 | 784605 | 787514 | + | CBM32 | GH2 |
| CAZyme | C89_contig_31 | C89_contig_31_611 | 787672 | 790461 | + | GH2 |
| pfam | C89_contig_31 | C89_contig_31_612 | 790468 | 791253 | + | BetaGal_ABD_1 | BetaGal_gal-bd |
| CAZyme | C89_contig_31 | C89_contig_31_613 | 791323 | 793428 | + | GH2 |
| STP | C89_contig_31 | C89_contig_31_614 | 793696 | 794796 | + | FecR |
| TC | C89_contig_31 | C89_contig_31_615 | 794828 | 798115 | + | 1.B.14.6.1 |
Gene ID: C89_contig_31_598
Type: TC
Location: 762265 - 762837 (-)
Type: TC
Location: 762265 - 762837 (-)
Gene ID: C89_contig_31_599
Type: TC
Location: 762841 - 765060 (-)
Type: TC
Location: 762841 - 765060 (-)
Gene ID: C89_contig_31_600
Type: TC
Location: 765273 - 766178 (+)
Type: TC
Location: 765273 - 766178 (+)
Gene ID: C89_contig_31_601
Type:
Location: 766235 - 766459 (-)
Type:
Location: 766235 - 766459 (-)
Gene ID: C89_contig_31_602
Type: CAZyme
Location: 766957 - 769278 (+)
Type: CAZyme
Location: 766957 - 769278 (+)
Gene ID: C89_contig_31_603
Type: CAZyme
Location: 769601 - 771796 (+)
Type: CAZyme
Location: 769601 - 771796 (+)
Gene ID: C89_contig_31_604
Type: CAZyme
Location: 771841 - 774333 (+)
Type: CAZyme
Location: 771841 - 774333 (+)
Gene ID: C89_contig_31_605
Type: CAZyme
Location: 774488 - 776074 (+)
Type: CAZyme
Location: 774488 - 776074 (+)
Gene ID: C89_contig_31_606
Type: TC
Location: 776438 - 779515 (+)
Type: TC
Location: 776438 - 779515 (+)
Gene ID: C89_contig_31_607
Type: TC
Location: 779546 - 781213 (+)
Type: TC
Location: 779546 - 781213 (+)
Gene ID: C89_contig_31_608
Type: pfam
Location: 781348 - 783129 (+)
Type: pfam
Location: 781348 - 783129 (+)
Gene ID: C89_contig_31_609
Type: pfam
Location: 783142 - 784590 (+)
Type: pfam
Location: 783142 - 784590 (+)
Gene ID: C89_contig_31_610
Type: CAZyme
Location: 784605 - 787514 (+)
Type: CAZyme
Location: 784605 - 787514 (+)
Gene ID: C89_contig_31_611
Type: CAZyme
Location: 787672 - 790461 (+)
Type: CAZyme
Location: 787672 - 790461 (+)
Gene ID: C89_contig_31_612
Type: pfam
Location: 790468 - 791253 (+)
Type: pfam
Location: 790468 - 791253 (+)
Gene ID: C89_contig_31_613
Type: CAZyme
Location: 791323 - 793428 (+)
Type: CAZyme
Location: 791323 - 793428 (+)
Gene ID: C89_contig_31_614
Type: STP
Location: 793696 - 794796 (+)
Type: STP
Location: 793696 - 794796 (+)
Gene ID: C89_contig_31_615
Type: TC
Location: 794828 - 798115 (+)
Type: TC
Location: 794828 - 798115 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides fragilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C89_contig_31_598 | vegan > omnivore | 1.73852 | 0.00500 |
| C89_contig_31_599 | vegan > omnivore | 1.24860 | 0.00500 |