Cluster: C89.bin_3_CGC59
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate: galactan/pectin/host glycan
- Genome ID: C89.bin_3
- CGC Family ID: CGCFAM_00485
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C89_contig_31 | C89_contig_31_563 | 710870 | 712576 | + | 3.A.3.7.2 |
| TC | C89_contig_31 | C89_contig_31_564 | 712598 | 714646 | + | 3.A.3.7.2 |
| TC | C89_contig_31 | C89_contig_31_565 | 714658 | 715233 | + | 3.A.3.7.2 |
| NULL(UNKNOWN) | C89_contig_31 | C89_contig_31_566 | 715243 | 715992 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C89_contig_31 | C89_contig_31_567 | 716088 | 717215 | + | KdpD |
| TC | C89_contig_31 | C89_contig_31_568 | 717244 | 718683 | + | 2.A.21.9.1 |
| TF | C89_contig_31 | C89_contig_31_569 | 718840 | 719403 | + | GerE |
| STP | C89_contig_31 | C89_contig_31_570 | 719457 | 720467 | + | FecR |
| TC | C89_contig_31 | C89_contig_31_571 | 720586 | 723999 | + | 1.B.14.6.1 |
| pfam | C89_contig_31 | C89_contig_31_572 | 724023 | 725510 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | C89_contig_31 | C89_contig_31_573 | 725634 | 728027 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C89_contig_31 | C89_contig_31_574 | 728200 | 731148 | + | GH115 |
Gene ID: C89_contig_31_563
Type: TC
Location: 710870 - 712576 (+)
Type: TC
Location: 710870 - 712576 (+)
Gene ID: C89_contig_31_564
Type: TC
Location: 712598 - 714646 (+)
Type: TC
Location: 712598 - 714646 (+)
Gene ID: C89_contig_31_565
Type: TC
Location: 714658 - 715233 (+)
Type: TC
Location: 714658 - 715233 (+)
Gene ID: C89_contig_31_566
Type:
Location: 715243 - 715992 (+)
Type:
Location: 715243 - 715992 (+)
Gene ID: C89_contig_31_567
Type: pfam
Location: 716088 - 717215 (+)
Type: pfam
Location: 716088 - 717215 (+)
Gene ID: C89_contig_31_568
Type: TC
Location: 717244 - 718683 (+)
Type: TC
Location: 717244 - 718683 (+)
Gene ID: C89_contig_31_569
Type: TF
Location: 718840 - 719403 (+)
Type: TF
Location: 718840 - 719403 (+)
Gene ID: C89_contig_31_570
Type: STP
Location: 719457 - 720467 (+)
Type: STP
Location: 719457 - 720467 (+)
Gene ID: C89_contig_31_571
Type: TC
Location: 720586 - 723999 (+)
Type: TC
Location: 720586 - 723999 (+)
Gene ID: C89_contig_31_572
Type: pfam
Location: 724023 - 725510 (+)
Type: pfam
Location: 724023 - 725510 (+)
Gene ID: C89_contig_31_573
Type:
Location: 725634 - 728027 (+)
Type:
Location: 725634 - 728027 (+)
Gene ID: C89_contig_31_574
Type: CAZyme
Location: 728200 - 731148 (+)
Type: CAZyme
Location: 728200 - 731148 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides fragilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.